Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1) AT2G29590 82 / 4e-20 Thioesterase superfamily protein (.1) AT1G52191 74 / 3e-17 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037583 [exp] 197 / 2e-65 AT3G16175 107 / 4e-30 Thioesterase superfamily protein (.1) Lus10006834 [exp] 195 / 9e-65 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1) Lus10037582 [exp] 166 / 2e-52 AT3G16175 86 / 5e-21 Thioesterase superfamily protein (.1) Lus10018205 [exp] 87 / 6e-22 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1) Lus10040701 [exp] 82 / 2e-20 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10004288 [exp] 65 / 2e-13 AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1) Lus10019228 [exp] 65 / 2e-13 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051900 [exp] 178 / 3e-58 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1) Potri.009G042100 [exp] 72 / 2e-16 AT2G29590 177 / 8e-58 Thioesterase superfamily protein (.1) Potri.004G134066 [exp] 64 / 2e-13 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 59 / 3e-11 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006837 pacid=23144426 polypeptide=Lus10006837 locus=Lus10006837.g ID=Lus10006837.BGIv1.0 annot-version=v1.0 ATGGGAAACGACGACGACGACGACAGTGTGGCGATCTCGAACAAATGGCTGCAAAATGTCGCCAGAGGATCAGATCAGCAGCAGCTCGTGCTGGAAAGCT TAACCATGGCGGGAATCACCATCGTCGATTCTCGGAAAGGGTTCATCCGTTGCCGATTCACAGTCTCCGATCGAATCACCGACGGAGAAGGGAATTGGGA AGTGGGAGCGATGGCGACGCTGATCGATGACGTGTCCGCGGCTGCAATCTACTCATTGGCCGGCCATGTCAAAGCTTCCGTCGATTTCAGCGTCTCTTTC TTCTCCACTGCTAAATCTCTGGAAGAAATGGAGGTAGAGGCAAAGGTGATCGGAGAGAAAGAAAGGCTGGCGTCGGTGGTGATAGAGGTCAGAAGGAGAA GCAACGGTGAGCTTATTGCTTTGGGGAAACAATGGATGGCTTCCCATAATAACACAACAACAACAACTAGTAAACTTTGA
AA sequence Show only first row Show all	>Lus10006837 pacid=23144426 polypeptide=Lus10006837 locus=Lus10006837.g ID=Lus10006837.BGIv1.0 annot-version=v1.0 MGNDDDDDSVAISNKWLQNVARGSDQQQLVLESLTMAGITIVDSRKGFIRCRFTVSDRITDGEGNWEVGAMATLIDDVSAAAIYSLAGHVKASVDFSVSF FSTAKSLEEMEVEAKVIGEKERLASVVIEVRRRSNGELIALGKQWMASHNNTTTTTSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	0	1
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Lus10019225 [exp]	1.4	0.8770
AT1G02070			unknown protein		Lus10009267 [exp]	2.0	0.8907
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	3.5	0.8606
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	4.6	0.8723
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	4.9	0.8669
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10019480 [exp]	5.5	0.8638
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	6.5	0.8386
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	6.6	0.8513
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	8.0	0.8578
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10028605 [exp]	8.7	0.8340

Compare expression of checked genes

Lus10006837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.