Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 378 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006835 [exp] 511 / 0 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 414 / 1e-145 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 405 / 1e-141 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 399 / 9e-140 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 398 / 3e-139 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 345 / 3e-118 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 283 / 5e-95 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017883 [exp] 201 / 3e-62 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 199 / 2e-61 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 395 / 2e-138 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 235 / 2e-75 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 233 / 7e-75 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10006838 pacid=23144396 polypeptide=Lus10006838 locus=Lus10006838.g ID=Lus10006838.BGIv1.0 annot-version=v1.0 ATGGCAGCCAACTTCTTCTTCCAGGAAATCAGCATTCCGAATCAGAAGCGATACACAAACTCCCCGTCGCCGTTCCCCGCCGTCCTGGCGCCTGCACTTC CAGCCTCCTCTGTTTCCGACCTCACTTCCGCCGTCGAATCTCACAAGCCGTACATAGAATCTCTGCTTCAGAAAACAGGGGCGATCCTCTTCAGGGGATT CCCACTCTCCGAGCCTTCACAGTTTAATCAAGTGGTGGAAGCTTTCGGATACGCCGACCAACCTTACGTCGGCGGCTCCCCCACCCGGACCCACGTCGTC GGCCGCGTCTACACTTCCAATGAGTCTCCGCCGGACAAGAAGATCCCTTTCCATCACGAGATGGCCTATGCGTCGGAGTTTCCGAAGAAGCTGTTCTTAT TCTGCGAAGTGGAGCCGGGTAGTGGCGGCGAAACGCCGATCGTGTTGAGCTATTTGATCTACGAGAGGATGAAAGATAAGTATCCGGAGTTCGTCGCGAA GCTGGAAAAGGAAGGGTTGATTTTCAACAGAGTGATGACCGGAGAAGACGACCCATCTTCCGTCATTGGCCGTGGCTGGAAGTCAACGTTTTCTACTAGT GACAGAGTCGTTGCTCAAGAAAGAGCAAAAAGGCTAGGAATGAAGCTGGAGTGGATGGACGATACTGAACGTTCACTAGTTATAAAATCAATCGGTCCAC TTCCGGCATTCAAACAAGACGAAACGACGCCGCATCGCAGGATTTGGTGGAACAGTATGGTCGCGAGCTATACGGCGTTCGGCGACGAACTAAACGACCC AACCAAGTCCGTCGTGTTTGGAAACGGGGAGCCTCTACCAAACGACGCAGTTCACGGGTGCGAGCAGATCATGGACGAGGAAAGCGTCGCTATTCCTTGG GAAAAAGGCGACATCCTGATGTTGGATAACTTGATCGTTCAACATGCTCGAAGGCTCTTCGCACCTCCTCGTCGGATCTTGGCCGCACTCTGCAAGTAA
AA sequence Show only first row Show all	>Lus10006838 pacid=23144396 polypeptide=Lus10006838 locus=Lus10006838.g ID=Lus10006838.BGIv1.0 annot-version=v1.0 MAANFFFQEISIPNQKRYTNSPSPFPAVLAPALPASSVSDLTSAVESHKPYIESLLQKTGAILFRGFPLSEPSQFNQVVEAFGYADQPYVGGSPTRTHVV GRVYTSNESPPDKKIPFHHEMAYASEFPKKLFLFCEVEPGSGGETPIVLSYLIYERMKDKYPEFVAKLEKEGLIFNRVMTGEDDPSSVIGRGWKSTFSTS DRVVAQERAKRLGMKLEWMDDTERSLVIKSIGPLPAFKQDETTPHRRIWWNSMVASYTAFGDELNDPTKSVVFGNGEPLPNDAVHGCEQIMDEESVAIPW EKGDILMLDNLIVQHARRLFAPPRRILAALCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006838 [exp]	0	1
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	10.5	0.8859
					Lus10040209 [exp]	14.3	0.8013
AT1G74220			unknown protein		Lus10040518 [exp]	14.8	0.8766
AT1G50380			Prolyl oligopeptidase family p...		Lus10032964 [exp]	19.0	0.8737
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10017904 [exp]	19.9	0.7291
AT1G21850		SKS8	SKU5 similar 8 (.1)		Lus10022648 [exp]	21.4	0.8726
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	24.2	0.8682
					Lus10011078 [exp]	26.2	0.8670
					Lus10011425 [exp]	28.2	0.8670
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	30.2	0.8670

Compare expression of checked genes

Lus10006838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.