Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 419 / 5e-148 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037585 [exp] 544 / 0 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 405 / 5e-142 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 399 / 2e-139 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 391 / 1e-136 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 373 / 2e-129 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 341 / 9e-117 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 288 / 4e-97 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006840 [exp] 207 / 2e-67 AT3G21360 174 / 8e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 182 / 8e-55 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 421 / 1e-148 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 228 / 7e-73 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 223 / 1e-70 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10006839 pacid=23144435 polypeptide=Lus10006839 locus=Lus10006839.g ID=Lus10006839.BGIv1.0 annot-version=v1.0 ATGGCGACCCATTTCCAGGAAACGCAGATCCCTCACCAGAAACACTTTCCCAACTCTCCACCATTCCCCGCCGTCCTAACACCAACTCCACCATCCTCCT CATCTCTCGCCGGCTTCACCTCCGCAGTCAAATCCGAAACCCAGTACCTCGAATCCCTGCTCCACGAAACAGGGGCGATCCTATTCAGGGGATTCCCACT CTCTACAGCTTCCGACTTCAACCAATTAGTCGAAGCCTTTGGATTCGCTGACTGCCCATATGTAGGCGGATCCGCATCCAGGACCAAAGTCGTTGGCCGG GTGTTCACCGCCAACGAGTCGCCGCCGGATCAGATGATCCCGTTCCACCACGAGTTGTCTCACGTCCGCGATACTCCGACGAAGCTGATGTTCTTCTGCG AGGAGGAGCCGGCAAGCGGCGGGGAGACTCCGGTGGTTTTGAGCCATTTGGTGTACGAGAGGATGAAGGAGCAGTTTCCTGAGTTTGTGAAGAAGCTTGA AGATGAAGGTCAGATTGGGATCAGGTTTTTGGGTGAAGACGACGACATTTCCTCTGCTATCGGCCGTGGCTGGAAGTCCACTTTCTCTACCGACGATCAA CATGTCGCCGAGCAAAGGGCGGAAGCCCTAGGGATGAAGCTGGATTGGATTACCGACGGCGACGGCGGATCAGTGGCCAAAACACTAACCGGACCGATGC CGGCAGTCAAGTTCGACAAGTCGAGGAATCGAAAAGTTTGGTTCAACGCATTGGCGGCGAGCTACACAGCTTTCGGCGACGAAAGGAACGACCCGGCCAA GTCGGTCGCGTTCGGCGGCGGCGACGCCTTGCCGAGCGACGCCATGTACGGCTGCCTGAAGATCATGGAAGAATTGAGTGTCGCTATTCCTTGGCAGAAG GGCGACGTCCTGCTGATCGACAACGGGGCCGTTCTTCATTCTCGTAACCTCTTCACCCCGCCTCGTCGCGTTCTCGCTGCACTTGGCAAGTAA
AA sequence Show only first row Show all	>Lus10006839 pacid=23144435 polypeptide=Lus10006839 locus=Lus10006839.g ID=Lus10006839.BGIv1.0 annot-version=v1.0 MATHFQETQIPHQKHFPNSPPFPAVLTPTPPSSSSLAGFTSAVKSETQYLESLLHETGAILFRGFPLSTASDFNQLVEAFGFADCPYVGGSASRTKVVGR VFTANESPPDQMIPFHHELSHVRDTPTKLMFFCEEEPASGGETPVVLSHLVYERMKEQFPEFVKKLEDEGQIGIRFLGEDDDISSAIGRGWKSTFSTDDQ HVAEQRAEALGMKLDWITDGDGGSVAKTLTGPMPAVKFDKSRNRKVWFNALAASYTAFGDERNDPAKSVAFGGGDALPSDAMYGCLKIMEELSVAIPWQK GDVLLIDNGAVLHSRNLFTPPRRVLAALGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	3.3	0.9589
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	3.9	0.9421
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	4.9	0.9564
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	6.3	0.9429
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	7.3	0.9465
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	8.8	0.9380
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	15.5	0.9309
AT4G16563			Eukaryotic aspartyl protease f...		Lus10000725 [exp]	15.5	0.9419
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	16.8	0.9087
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	17.0	0.9163

Compare expression of checked genes

Lus10006839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.