Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 174 / 9e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037585 [exp] 239 / 3e-80 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 207 / 9e-68 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 165 / 4e-51 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 163 / 2e-50 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 159 / 2e-48 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 156 / 1e-47 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 124 / 2e-35 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 120 / 2e-34 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 79 / 4e-18 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 169 / 1e-52 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 84 / 3e-20 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 83 / 8e-20 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10006840 pacid=23144402 polypeptide=Lus10006840 locus=Lus10006840.g ID=Lus10006840.BGIv1.0 annot-version=v1.0 ATGTTTGCTGCAACCATAAACTGCAGGGCGGAAAACTTAGGGATGAAGCTGGAGTGGATTTCCGCCGTAGACGACTGCAGATCGGTGGCCAAGACATCGA TCGGTCCGATCCCAGCAATCAAATTCGACAAGTCGAGGAACTACAAAGTCTGGTTCAACGCATTGGTGACAAGCTACACGGCCTTCGGCGACAAAAGAAA CGATTCGGCCAAGTCCATCGCGTTCGGCGGCGGCGATCCTCTGCCTAGCGACGCCGTGTATGGCTGCCTGAGGATCATGGAAGAGCTGAGCGTCGCGGTT CCTTGGCAGAAGGGTGACGTCCTGATGATCGATAATTGGGCCGTTCTTCATTCTCGTAAGCTCTTCACCCCGCCTCGTCGAGTTCTCGCTGCACTCTGCA AGTAA
AA sequence Show only first row Show all	>Lus10006840 pacid=23144402 polypeptide=Lus10006840 locus=Lus10006840.g ID=Lus10006840.BGIv1.0 annot-version=v1.0 MFAATINCRAENLGMKLEWISAVDDCRSVAKTSIGPIPAIKFDKSRNYKVWFNALVTSYTAFGDKRNDSAKSIAFGGGDPLPSDAVYGCLRIMEELSVAV PWQKGDVLMIDNWAVLHSRKLFTPPRRVLAALCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006840 [exp]	0	1
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	4.5	0.8040
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033450 [exp]	4.8	0.8558
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	8.3	0.8343
AT5G50220			F-box family protein (.1)		Lus10015170 [exp]	9.1	0.8418
AT5G07610			F-box family protein (.1)		Lus10042990 [exp]	9.3	0.6977
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10035782 [exp]	21.8	0.8060
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10035076 [exp]	25.6	0.6489
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	26.6	0.7902
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040923 [exp]	30.7	0.7727
AT5G15430			Plant calmodulin-binding prote...		Lus10015733 [exp]	31.5	0.7896

Compare expression of checked genes

Lus10006840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.