Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 808 / 0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 271 / 8e-82 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G24790 227 / 3e-68 Protein kinase superfamily protein (.1) AT3G07070 222 / 1e-65 Protein kinase superfamily protein (.1) AT5G02800 221 / 1e-65 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT4G32710 219 / 6e-65 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT3G20530 219 / 7e-65 Protein kinase superfamily protein (.1) AT1G20650 219 / 8e-65 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT2G28590 216 / 4e-63 Protein kinase superfamily protein (.1) AT3G24550 221 / 6e-63 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037586 [exp] 1233 / 0 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 333 / 3e-105 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10026689 [exp] 333 / 4e-105 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 320 / 3e-100 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 282 / 6e-86 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 276 / 6e-84 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 276 / 3e-80 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10011148 [exp] 227 / 8e-68 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 226 / 3e-67 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190200 [exp] 910 / 0 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 353 / 6e-113 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 352 / 9e-113 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 346 / 2e-110 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.006G252600 [exp] 323 / 6e-102 AT1G51940 326 / 4e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.014G156400 [exp] 283 / 3e-86 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.002G226600 [exp] 282 / 5e-86 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 275 / 3e-83 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.006G133300 [exp] 224 / 2e-66 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.002G009300 [exp] 223 / 2e-66 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10006841 pacid=23144438 polypeptide=Lus10006841 locus=Lus10006841.g ID=Lus10006841.BGIv1.0 annot-version=v1.0 ATGAATCACTTGCTTCAGCTCTTGATTCCCCTCCTCCTCCTCCTATGGCGGCTCCCTCTCAGAACCACCCAATCCATCCCCAAACCCATGAACTGTACGG AAACATCCCGCCTCTGCACCTCTTTCCTAGCTTTCAAACCAGCGAAAGACCAGACCTTTGGAGTTATCCAGAGCATGTTCGACGTATTGGCTCAGGACAT AACAGTAGAAGGCGGGTCGAGTGAGTATGTGTTCGTGAGGAAGAACTGCTCTTGCCTTTCAGACGAAAGAGTGTCGTACTACGCTACCAATTCTACTTAC ACGGTGAAATCCAACGGCGGGTTTGTCAACGACGTCGTATCGGGCGCCTATGATGGGCTTGCTTTAGTGTTTCCCAACAACAATGCTACCAGCAAGAGGA ATGCTAGAGCTGGAGCTGTGGTGTCGGTGAGGCTGTTGTGTGGGTGTTCCAGTGGGCTGTGGAATTACTTGATGAGCTATGTGATGGAAGAAGGTGACTC TGTGGAGTCTTTGTCCAGTAGGTTTGGAGTTAGTATGGCGAGCATTGAAGGTGTGAATGGGATCAATAGCCCTGATAATATTACTGTCGGTTCTGTCTAC TATGTCCCTCTCAACTCAGCTCCTGGTGAACCTTATTCGGTTGAGAGTGACATTCCTCCTGTGATTGCTCCTTCATCTTCTGATGCTGTCAACTCGTCCG CTTCAGGAAATCCGGAGAAGAAGAAGGGTCATGTCTCGTATGCATGGATCATTATGGGACTAGGGATTGTCCTTGTTGTAATTGTTTTGTTCATAGTTAT ATGTGCCTGCTTCAAGTGTTCGAGCTGCTGTTCTAAAGACGAAGCTGATGGCCATGCTGCTGCAAACACTGTTGGGGGGAAGGTTTCTCATAGTTTTCAA ATTCTACGAAAGCCGAGCTTCTGCTGTGGTTCAGCACGGTACACTGGCGCCAACTCGGAAGAGTGGAAGCAAACCAACGGCGAGACTAGTAACTACCACC ACAACATCACTATACCTAGAGGTTTGGCAACCGATGTGTTTGACATGGAGAAACCAGTGGTCTTCTCGTATGAAGAGATACACTTTGCAACTGATGGATT CTCTGATTCGAATCTTCTCGGACATGGAACTTTCGGTTCTGTGTATCATGGCCACATTCCTGACCAGGAAGTGGCTATTAAGAGAATGACTGCCACAAAA ACCAAGGAATTTTTGGCTGAGATGAAGGTTCTCTGCAGGGTCCATCATGCTAATCTGGTAGAACTGATTGGCTACGCAGCTACTGATGACGAACTCTTCC TCGTTTACGAGTATGCTCAAAAGGGTTCTCTCCAAAGCCATTTACATGATCCTCAGAACAAGGGTCAAACATCCCTTTCTTGGACTATGAGACTACAGAT AGCACTTGATGCAGCAAGGGGGCTCGAGTATATCCACGAGCACACGAAAACTCACTATGTGCATCGCGATGTTAAGTCAAGCAACATCCTGCTTGATGGT TCTTTCCGGGCTAAGATTTCAGATTTCGGATTGGCGAAACTTGTTGGCAGAGCAGGCGAGGGTGAAGCTACAGTAACCAAAGTAGTGGGGACCTTCGGTT ATCTGGCTCCAGAATACTTGAGAGACGGTCTAGCCACTTCCAAAAGCGATGTGTACGCATTTGGCGTCGTTCTGTTCGAGCTAATATCCGGCAAGGAAGC TGTGATACGAAGCGAGGGAGGTGCATCCAAGAATCCTGATCGACGCTCATTAGCATCAACGATGCTAGCTGCTCTTAGAAGCTCGCCCGAGTCGATGACA GCAGCGAGCTTGAAAGACCACATTGATCCTAACATGATGGATTTGTACCCCCATGATTGCTTGCTCAAGGCTGTGATGGTGGCGAAGCATTGCGTGGAGG ACGATCCGATCCTGAGGCCGGACATGAAGCAAGTAGTGATGTCGTTGTCACAGATTCTTTTGTCGTCGATCGAGTGGGAAGCAACTCTTGCTGGGAACAG TCAGGTTTTTAGTGGCCTTGTCCAGGGAAGATGA
AA sequence Show only first row Show all	>Lus10006841 pacid=23144438 polypeptide=Lus10006841 locus=Lus10006841.g ID=Lus10006841.BGIv1.0 annot-version=v1.0 MNHLLQLLIPLLLLLWRLPLRTTQSIPKPMNCTETSRLCTSFLAFKPAKDQTFGVIQSMFDVLAQDITVEGGSSEYVFVRKNCSCLSDERVSYYATNSTY TVKSNGGFVNDVVSGAYDGLALVFPNNNATSKRNARAGAVVSVRLLCGCSSGLWNYLMSYVMEEGDSVESLSSRFGVSMASIEGVNGINSPDNITVGSVY YVPLNSAPGEPYSVESDIPPVIAPSSSDAVNSSASGNPEKKKGHVSYAWIIMGLGIVLVVIVLFIVICACFKCSSCCSKDEADGHAAANTVGGKVSHSFQ ILRKPSFCCGSARYTGANSEEWKQTNGETSNYHHNITIPRGLATDVFDMEKPVVFSYEEIHFATDGFSDSNLLGHGTFGSVYHGHIPDQEVAIKRMTATK TKEFLAEMKVLCRVHHANLVELIGYAATDDELFLVYEYAQKGSLQSHLHDPQNKGQTSLSWTMRLQIALDAARGLEYIHEHTKTHYVHRDVKSSNILLDG SFRAKISDFGLAKLVGRAGEGEATVTKVVGTFGYLAPEYLRDGLATSKSDVYAFGVVLFELISGKEAVIRSEGGASKNPDRRSLASTMLAALRSSPESMT AASLKDHIDPNMMDLYPHDCLLKAVMVAKHCVEDDPILRPDMKQVVMSLSQILLSSIEWEATLAGNSQVFSGLVQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	0	1
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	1.4	0.9137
AT5G47540			Mo25 family protein (.1)		Lus10041405 [exp]	2.8	0.9124
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	4.0	0.8703
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	5.3	0.8905
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	6.2	0.9038
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	7.4	0.8786
AT1G06930			unknown protein		Lus10009096 [exp]	7.7	0.8976
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	8.1	0.8528
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	9.2	0.8731
AT1G26120		ICME-LIKE1	Isoprenylcysteine methylestera...		Lus10035064 [exp]	9.5	0.8642

Compare expression of checked genes

Lus10006841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.