Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16500 223 / 1e-71 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G51950 189 / 9e-59 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1) AT5G25890 104 / 4e-27 AUX_IAA IAR2, IAA28 IAA-ALANINE RESISTANT 2, indole-3-acetic acid inducible 28 (.1) AT4G29080 103 / 1e-25 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT1G04100 100 / 1e-24 AUX_IAA IAA10 indoleacetic acid-induced protein 10 (.1) AT4G28640 100 / 2e-24 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT2G22670 99 / 8e-24 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT3G04730 97 / 1e-23 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT5G65670 98 / 2e-23 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G33310 97 / 2e-23 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037587 [exp] 457 / 2e-163 AT3G16500 251 / 4e-83 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038285 [exp] 257 / 2e-84 AT3G16500 224 / 3e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10038284 [exp] 254 / 1e-82 AT3G16500 223 / 6e-71 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10025817 [exp] 253 / 2e-82 AT3G16500 231 / 1e-74 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10023719 [exp] 103 / 2e-25 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10014464 [exp] 102 / 8e-25 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10019241 [exp] 102 / 8e-25 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 101 / 1e-24 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 100 / 1e-23 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190300 [exp] 273 / 2e-90 AT3G16500 235 / 3e-76 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.003G048100 [exp] 268 / 2e-88 AT3G16500 224 / 4e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.018G057000 [exp] 172 / 4e-51 AT3G16500 192 / 3e-59 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.006G236200 [exp] 158 / 6e-46 AT3G16500 184 / 3e-56 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.010G065200 [exp] 110 / 4e-28 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.008G172400 [exp] 106 / 2e-26 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.002G256600 [exp] 103 / 2e-25 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.002G108000 [exp] 98 / 6e-23 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.013G041400 [exp] 93 / 4e-22 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.003G051300 [exp] 95 / 5e-22 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10006842 pacid=23144430 polypeptide=Lus10006842 locus=Lus10006842.g ID=Lus10006842.BGIv1.0 annot-version=v1.0 ATGGAGGGTGGTTGTTCAAAGGGAGGTGAAGCCTGTCCTAAGTTGCTGGATTTGATCTCCAATGAAAGGGTTGTTTCTAAAGGGAATGGAGATTTCGCTG GTAATGGTTGTTGTTCTTCTTCAGTGGAGCAGAAGCTTGAGCTAAGGCTTGGTCTTCCTGGTGATGATGAATGGTTCTCTATGGGATATTTCAGCCATGG AAACAAAATTTATGCTCCTCATGAGAAGTCACAAGGGAAGAAGGAATCTTCCTCAAAGCCCTGTTGCACTAAAGTAGTAGACTTGAATCAGACTACTACT GCAGAAAAGAAACCATTTTCACCACAAGCTGCTGCTTCCCCTACTCCTGCACATACAGCTGTCCCCAACATCTCTCAGAAAAGAACTGCTCCAGGGCCAG TGGTGGGATGGCCTCCAATCCGTTCATTTAGGAAGAATCTAGCGGGAAGTTCTTCGAAGCCATCATCACATGATTCCCAGAATGGTGGGAGCCCAAACAA GAAGGCTGCTAGTGAGAAATTACTACCTGTTGAAGTTTGCAAGAGAGGGATGTTTGTTAAGATCAACATGGATGGTGTCCCCATTGGGAGGAAAGTGGAT CTTGCAGCCTATGATAGCTACAGTAGACTCTCCACTGCTGTTGATGAGCTTTTCAGAGATCTACTTGCAGCTCAAAGAGATTCCAGTGTTGGTGGGATGA TGAACAAGCAGGGAGAGGAAGATGAGAAAGCAATTATTACAGGGTTAATGGATGGGAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAG GATGCTTGTTGGAGATGTCCCATGGCAGTACCTTTTGTCACTAAACAAACCGATTGCTACTAACGACCGGTTCATGGATTTTGTGCAGCATGTTTGTGTC TACTGTGAAGAGACTTCGAGTTCTGAAGAGCTCTGA
AA sequence Show only first row Show all	>Lus10006842 pacid=23144430 polypeptide=Lus10006842 locus=Lus10006842.g ID=Lus10006842.BGIv1.0 annot-version=v1.0 MEGGCSKGGEACPKLLDLISNERVVSKGNGDFAGNGCCSSSVEQKLELRLGLPGDDEWFSMGYFSHGNKIYAPHEKSQGKKESSSKPCCTKVVDLNQTTT AEKKPFSPQAAASPTPAHTAVPNISQKRTAPGPVVGWPPIRSFRKNLAGSSSKPSSHDSQNGGSPNKKAASEKLLPVEVCKRGMFVKINMDGVPIGRKVD LAAYDSYSRLSTAVDELFRDLLAAQRDSSVGGMMNKQGEEDEKAIITGLMDGSGEYTLVYEDNEGDRMLVGDVPWQYLLSLNKPIATNDRFMDFVQHVCV YCEETSSSEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	0	1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	1.0	0.9428
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10034441 [exp]	1.7	0.8559
AT4G38810			Calcium-binding EF-hand family...		Lus10007567 [exp]	2.0	0.8913
AT4G38810			Calcium-binding EF-hand family...		Lus10012178 [exp]	4.5	0.8246
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	4.9	0.8200
AT2G17080			Arabidopsis protein of unknown...		Lus10012368 [exp]	11.0	0.8386
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	11.0	0.7703
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	11.2	0.7728
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	11.6	0.7847
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10002226 [exp]	12.6	0.7593

Compare expression of checked genes

Lus10006842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.