Plant FIBer expression Database

Lus10006845 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16630 50 / 6e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037590
[exp]
583 / 0 ND 53 / 8e-07
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G190601
[exp]
50 / 7e-06 AT1G16630 46 / 7e-05 unknown protein
PFAM info
Representative CDS sequence
>Lus10006845 pacid=23144380 polypeptide=Lus10006845 locus=Lus10006845.g ID=Lus10006845.BGIv1.0 annot-version=v1.0
ATGTCCGACCCTAATCAGCCGTCGCCGGCCAAGAAGAAACTCCGTCCGCCGTCCCTGAAAGGCGGAGATGAGAATTTGTCGAGTGTGAAGAAATCGCCGA
TGAAGCGTTTCATGTCGCCGACGATATCCCGAGCTGCGAAGGTCAATCCGGTTCCAAGAACAAAGATTCCAGCGGCGGACAGAAATGAATCTCCGGCCAA
GTTGGCTTCTCCGAGAGCTTCAAGTTTCAATTTGAATAACGACGGATTCAGGGATGAGAATGAGAAGGAACGCAGCAACAACGGTGATAACAACAACCTA
ATCACTGACGGTTCATCGCCGATTCCGTCGAGCAATTACCTTTCCGTCAGCAGAAGTGATGGAGATGAGAGCTTGTCGAGTGTAAAGAAATCGCCGATGA
AGCATTTCTTGTCCCCGACGGCCAATCAGCTTTCAAGAACAAGGGTTCTAGCGGAACGAAATGAATCTCCTTCGATCAAGTTCGTTCCTACTCCTCCACC
ACCGAGAGCTTCAAGTTTCAAGCTGAATAATGGCGGATTCAGGGATGAGAATGACAAGGAATGGAACCACAACACCAACATCGACACCCTAATTACTGAC
GATTTGTCACCGATGATTCCTTACAACCCGGCAAGCAATTACCTCTCCCCACGGCCTAAATTCCTGCGATACAATCCAGAACGACGAAGCCAGATCTTGC
GTAGAAGGGTCAAGCTGAAGGAGGAGGATGTGTTGGATCTCGAGCAAGATACTACAGATACCGAGTCTGACATTTCCCCTGGTAATGCTGCTGCTGCTGC
TCCTTTGTCTCCGGCCAAGGATGATGAAATGGATGATGCGATCGAGGAGGATGAATTTGAAGAAGAGGATGAGGGAAGTTCGGTTTTCGGAAGGGTGTTT
CAGTTTCTGCTTCTGTTGATGGTTTTGATAGCTTCCATATTGTACATCACTTCAATGAACAACCTCAACCCGGTTGAAGCTGACTATCAAGAGATTCAGA
GCTGCTACCCCCTAGTTGGGTTTGGGAGGAAGATAGAGGTTAATGGAACCTGCTTGTTAGTTGGAGAAGGAATGATGTTACGACAACAACAACATCCTGT
TGTTGCTCCTTCCTTCCTTGTGGACGTGGAGCAGAAAGGAGATGGAGAGGAAGAAGAAGCTATGGAGGAGGTTTCCGAAGGAGGAATGGTGGTGGTTGAG
CTTCAGAAGGCTGAAGCTATGGAGATTCAGGAGGAAGAAGAGAACTTCATAGATATTACTGAAGATGAGAATAATGAAGCTCCCTACACAGAAGTTCTCC
ATCCTGCAGCTATGGAAGTTCTGGAAGAAGAGAGGTTGATGGAAGAAGAGAACTTCATCGATATTACTGAAGATGAGACTAATGAAGCTCCCTACAAAGA
TGTTCTCCATCCTGCAGCTGTGGAAGTTCTGGAAGAAGAGAGGTTGATGGAAGTGGAGCAGAAAGGAGAAGAAGAAGAAGAAAAAGAAAAAGAAGAAGCT
ATGGAGGAGGTTTCAGAAGGAGGGATACTACTGGTAGTTGATGAGCATCAACCTTCTGAAGTTGTGGAGATTCAAGAGAAAGAAGAGAGCTTTATAGATT
TGGAAGAAGTTACTGAGGATGGTATTGATGGAGCTAAGGAAGAAGAGAGTTTCATAGATGTGGAACAAGTTAGTGAAGATGTGATTGATGAAGTTACTAC
ACCCCAGAATGGAAAGTCAATGGTTGACTTCATTGTTCTGCTCTATGCAGCAATACTTGCTTCAGCTGCTGGATTGCTGGTGCTTCTTATGATGACGATG
AGGAAGAGGCGAAATGTTGCTTCTCGGGACAATGCTGATCGTAGGTCCAAGTCTACCTTGGTTCGGCCATCTCCTCCACGAGCTCTGAGAAACAGCTCAA
CTGCTGAAGAGAAGAACAATGAAGCAGCTGAGAAGAAGAGTGAAGCAGCTGTTGTTCAGGAACAGGCTGAGAGTTCTTGTTCAACAATGGCTAGTGGCAA
GAAAGGAACTAGCTCCATCAACAACAACAAGAACGAGCTAAATGCAGAAGAGGCAAGTCGAAGCGATTCTCCAGTTGGTTTTCGACAGGCTGAGAGTCAT
TGTTCAACAACGACAAGTGGCGAGAAAGGCACGACGAGCTCCACTTCCTCTATCATCAAGAGGAAGAAGAAGCAGGAGGAAATTGGAGACGCAGGCACTA
CTACTCCATTGAGGAGATCAACTAGAATAGCAGCCAGCCGTGGGATTCTTTCCCCTTGA
AA sequence
>Lus10006845 pacid=23144380 polypeptide=Lus10006845 locus=Lus10006845.g ID=Lus10006845.BGIv1.0 annot-version=v1.0
MSDPNQPSPAKKKLRPPSLKGGDENLSSVKKSPMKRFMSPTISRAAKVNPVPRTKIPAADRNESPAKLASPRASSFNLNNDGFRDENEKERSNNGDNNNL
ITDGSSPIPSSNYLSVSRSDGDESLSSVKKSPMKHFLSPTANQLSRTRVLAERNESPSIKFVPTPPPPRASSFKLNNGGFRDENDKEWNHNTNIDTLITD
DLSPMIPYNPASNYLSPRPKFLRYNPERRSQILRRRVKLKEEDVLDLEQDTTDTESDISPGNAAAAAPLSPAKDDEMDDAIEEDEFEEEDEGSSVFGRVF
QFLLLLMVLIASILYITSMNNLNPVEADYQEIQSCYPLVGFGRKIEVNGTCLLVGEGMMLRQQQHPVVAPSFLVDVEQKGDGEEEEAMEEVSEGGMVVVE
LQKAEAMEIQEEEENFIDITEDENNEAPYTEVLHPAAMEVLEEERLMEEENFIDITEDETNEAPYKDVLHPAAVEVLEEERLMEVEQKGEEEEEKEKEEA
MEEVSEGGILLVVDEHQPSEVVEIQEKEESFIDLEEVTEDGIDGAKEEESFIDVEQVSEDVIDEVTTPQNGKSMVDFIVLLYAAILASAAGLLVLLMMTM
RKRRNVASRDNADRRSKSTLVRPSPPRALRNSSTAEEKNNEAAEKKSEAAVVQEQAESSCSTMASGKKGTSSINNNKNELNAEEASRSDSPVGFRQAESH
CSTTTSGEKGTTSSTSSIIKRKKKQEEIGDAGTTTPLRRSTRIAASRGILSP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16630 unknown protein Lus10006845
[exp]
0 1
Lus10037590
[exp]
1.4 0.9812
AT4G33400 Vacuolar import/degradation, V... Lus10042656
[exp]
1.7 0.9788
AT1G26760 SDG35, ATXR1 SET domain protein 35 (.1) Lus10037155
[exp]
2.4 0.9790
AT4G14330 P-loop containing nucleoside t... Lus10021167
[exp]
2.4 0.9727
AT5G25090 AtENODL13 early nodulin-like protein 13 ... Lus10026880
[exp]
2.6 0.9724
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10039033
[exp]
3.2 0.9739
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Lus10038729
[exp]
3.5 0.9787
AT5G42330 unknown protein Lus10013229
[exp]
5.7 0.9607
AT5G25380 CYCA2;1 cyclin a2;1 (.1) Lus10013140
[exp]
6.0 0.9641
AT3G47460 ATSMC2 Structural maintenance of chro... Lus10027215
[exp]
6.7 0.9666

Lus10006845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.