Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19770 198 / 6e-67 PRF5 profilin 5 (.1) AT4G29340 194 / 2e-65 PRF4 profilin 4 (.1) AT2G19760 186 / 3e-62 PRF1, PFN1 profilin 1 (.1) AT4G29350 181 / 3e-60 PRF2, PFN2, PRO2 profilin 2 (.1) AT5G56600 182 / 6e-60 PRF3, PFN3 profilin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037591 [exp] 239 / 5e-83 AT2G19770 231 / 6e-80 profilin 5 (.1) Lus10011138 [exp] 205 / 1e-69 AT2G19760 225 / 2e-77 profilin 1 (.1) Lus10043040 [exp] 204 / 3e-69 AT5G56600 223 / 1e-76 profilin 3 (.1.2) Lus10012936 [exp] 203 / 1e-68 AT4G29350 223 / 2e-76 profilin 2 (.1) Lus10034988 [exp] 200 / 1e-67 AT4G29340 219 / 3e-75 profilin 4 (.1) Lus10043041 [exp] 199 / 6e-67 AT4G29340 239 / 9e-83 profilin 4 (.1) Lus10034989 [exp] 196 / 6e-66 AT4G29340 234 / 6e-81 profilin 4 (.1) Lus10011139 [exp] 193 / 7e-65 AT4G29340 238 / 1e-82 profilin 4 (.1) Lus10012935 [exp] 191 / 4e-64 AT4G29340 235 / 2e-81 profilin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G047700 [exp] 211 / 5e-72 AT4G29340 224 / 5e-77 profilin 4 (.1) Potri.001G190800 [exp] 210 / 1e-71 AT2G19760 196 / 8e-66 profilin 1 (.1) Potri.006G235200 [exp] 200 / 2e-67 AT4G29340 216 / 1e-73 profilin 4 (.1) Potri.018G057600 [exp] 196 / 7e-66 AT4G29340 188 / 5e-63 profilin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF00235 [flax] [poplar] Profilin Profilin
Representative CDS sequence Show only first row Show all	>Lus10006846 pacid=23144418 polypeptide=Lus10006846 locus=Lus10006846.g ID=Lus10006846.BGIv1.0 annot-version=v1.0 ATGTCGTGGCAGACTTACGTCGACGAGCACCTGATGTGCGATATTGAAGGCAACCACCTCGCATCCGCCGCTATCATCGGCCACGACGGCAGCGTCTGGG CTCAGAGCGCCAACTTCCCAGCGTGTAAACCAGAGGAGATAACTGCAATGATGAAGGATTTTGACGAGCCTGGGACTCTTGCCCCAACCGGATTGCACCT CGCTGGAGCAAAGTATATGGTGATCCAAGGAGAGGCAGGAGCTGTGATTCGTGGAAAGAAGGGTGCGGGAGGCGTGACAGTAAAGAAAACAGGGCAAGCA CTAGTGTTCGGTCTGTACGAAGAACCAGTAACTCCGGGACAATGCAACATGGTCGTCGAGAGGTTGGGAGATTACCTTGTTGATCAAGGACTCTAA
AA sequence Show only first row Show all	>Lus10006846 pacid=23144418 polypeptide=Lus10006846 locus=Lus10006846.g ID=Lus10006846.BGIv1.0 annot-version=v1.0 MSWQTYVDEHLMCDIEGNHLASAAIIGHDGSVWAQSANFPACKPEEITAMMKDFDEPGTLAPTGLHLAGAKYMVIQGEAGAVIRGKKGAGGVTVKKTGQA LVFGLYEEPVTPGQCNMVVERLGDYLVDQGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	0	1
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	1.4	0.8771
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	2.4	0.8083
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	3.5	0.7950
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	5.1	0.8471
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	8.4	0.7793
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	13.7	0.7266
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10025516 [exp]	13.9	0.7773
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	16.7	0.7550
AT1G05070			Protein of unknown function (D...		Lus10030034 [exp]	19.3	0.7012
AT4G17350			Plant protein of unknown funct...		Lus10004734 [exp]	24.6	0.6228

Compare expression of checked genes

Lus10006846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.