Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01590 46 / 4e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G047600 [exp] 58 / 2e-10 AT4G01590 93 / 2e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006847 pacid=23144384 polypeptide=Lus10006847 locus=Lus10006847.g ID=Lus10006847.BGIv1.0 annot-version=v1.0 ATGGAGGAAATCGAATTGCCGGATCGCAAAGCCGTCAAGGAAGAGAAGATCTTAATTGCCGTGAATTCTAAGTTTCAAGCTTTCTGGAAAGCTTCCTCTT ACCGCCTCGAATACACCGGCGATTCAACTGCCAAGAGTAAGTTTAGGGGGTTTAATTTTCCTTTCACGCATTTGGTCGAACACCTTTTGGGCAGCCTCAA ATTCATGTCCTTAACTGAATTGCTGGTATCATTTTGTTTAGAGGACTGGGATATGGAAGTGGAGAGATTCTCTGACAGAACAAAGAAAAAGACCACATTG AAACGTGGCCCGCTTCATGAATTTCTGCTGTTTAGGCCTGCATATTTCCCCAAGGAATTGATTGGAGATCATTTCGCTCAGTTGGATGATTTTGAGAAGC GTGAACAGGAATTGGATGGCAAGGAGACTAAAGAAGGTGAAGATGAAGAAGAAGAGGGAGACAAAGACGAAGAAGACATTGTACCAACCGATGAGGATGA AGTGAGCGAGGACGACTATAATAAGAACGAGGATTTCGACGATGATGAAGACGATGTCAACGACGTTGTTGATGACGATGGTATGAAATTGTTCACTTTA ACCATGCTTCTGATTGAATGA
AA sequence Show only first row Show all	>Lus10006847 pacid=23144384 polypeptide=Lus10006847 locus=Lus10006847.g ID=Lus10006847.BGIv1.0 annot-version=v1.0 MEEIELPDRKAVKEEKILIAVNSKFQAFWKASSYRLEYTGDSTAKSKFRGFNFPFTHLVEHLLGSLKFMSLTELLVSFCLEDWDMEVERFSDRTKKKTTL KRGPLHEFLLFRPAYFPKELIGDHFAQLDDFEKREQELDGKETKEGEDEEEEGDKDEEDIVPTDEDEVSEDDYNKNEDFDDDEDDVNDVVDDDGMKLFTL TMLLIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01590			unknown protein		Lus10006847 [exp]	0	1
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	3.5	0.8090
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	3.7	0.8210
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	10.1	0.7801
					Lus10043057 [exp]	10.5	0.8074
AT5G46030			unknown protein		Lus10025438 [exp]	12.0	0.7967
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	21.4	0.7744
					Lus10027225 [exp]	24.5	0.7631
AT3G05400			Major facilitator superfamily ...		Lus10029970 [exp]	26.2	0.7706
AT2G43780			unknown protein		Lus10035718 [exp]	28.1	0.7515
AT5G12320			ankyrin repeat family protein ...		Lus10036033 [exp]	28.9	0.7468

Compare expression of checked genes

Lus10006847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.