Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26170 131 / 4e-38 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT5G64810 123 / 9e-35 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT4G39410 106 / 3e-27 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT3G01970 102 / 4e-27 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT5G49520 107 / 6e-27 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G26640 106 / 3e-26 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G47260 103 / 5e-26 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT4G18170 103 / 8e-26 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G29860 102 / 1e-25 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT1G69310 102 / 1e-25 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036624 [exp] 122 / 6e-34 AT5G26170 125 / 2e-36 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10035841 [exp] 116 / 1e-31 AT5G64810 131 / 4e-38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Lus10037785 [exp] 110 / 4e-28 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10017067 [exp] 109 / 7e-28 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10016595 [exp] 107 / 2e-26 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10026409 [exp] 102 / 2e-26 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10003769 [exp] 107 / 3e-26 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10015377 [exp] 106 / 5e-26 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10012322 [exp] 105 / 5e-26 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224100 [exp] 140 / 1e-41 AT5G26170 139 / 2e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Potri.007G079800 [exp] 116 / 6e-32 AT5G64810 140 / 3e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.005G085200 [exp] 114 / 4e-31 AT5G64810 145 / 4e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.008G103300 [exp] 110 / 3e-28 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.007G078200 [exp] 104 / 6e-27 AT4G39410 189 / 4e-59 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.010G147700 [exp] 106 / 7e-27 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.003G169100 [exp] 102 / 7e-27 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.017G066860 [exp] 102 / 9e-27 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.011G087900 [exp] 108 / 1e-26 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.005G086400 [exp] 103 / 1e-26 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10006848 pacid=23144436 polypeptide=Lus10006848 locus=Lus10006848.g ID=Lus10006848.BGIv1.0 annot-version=v1.0 ATGTCGTTCAATTTCGTCAATAATCCGTCCCCCCACACCAGTGACGATCAGTACTCCTACTACGGAGACAGTAGTAACAATGCTACATCGTTGGAGCTGT CGGAGTTACTGTCGTTGAACGAATGGGCGGATGAGCGCGACAGAGATCCACCCAATTGGTTCACTACTACAGTTGACAATGCTCCTATAATCTCTGTGGT CGATGGATCCTCCACTGCCACCACCGAGGATAACCGGAGTGGTGAGGTAACAAAAGAAAGGGTGTCATTCAAGACAAAATCAGAGGTAGAGGTGTTGGAT GACGGTTATAGGTGGAGGAAGTACGGCAAGAAGATGGTTAAAAATAACCATAACCCAAGGAATTATTATAAATGCTCGAGCGAAGGGTGCCCCGTGAAGA AGAGAGTGGAAAGGGATAGAGATGACCCATCTTATGTCATCACTACCTATGAAGGTCTCCACACCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATT TTGAACTTATTGATGAATTATTATATATATTTTATATTTGA
AA sequence Show only first row Show all	>Lus10006848 pacid=23144436 polypeptide=Lus10006848 locus=Lus10006848.g ID=Lus10006848.BGIv1.0 annot-version=v1.0 MSFNFVNNPSPHTSDDQYSYYGDSSNNATSLELSELLSLNEWADERDRDPPNWFTTTVDNAPIISVVDGSSTATTEDNRSGEVTKERVSFKTKSEVEVLD DGYRWRKYGKKMVKNNHNPRNYYKCSSEGCPVKKRVERDRDDPSYVITTYEGLHTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYFELIDELLYIFYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	1.0	0.9289
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	2.0	0.9117
					Lus10005901 [exp]	5.7	0.8889
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	6.0	0.8996
AT1G23850			unknown protein		Lus10030860 [exp]	6.0	0.9135
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10022344 [exp]	9.5	0.8480
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	10.7	0.9016
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10027281 [exp]	10.9	0.8149
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003396 [exp]	11.1	0.9168
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10014084 [exp]	12.7	0.7888

Compare expression of checked genes

Lus10006848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.