Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 113 / 9e-32 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 109 / 3e-30 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 106 / 5e-29 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 97 / 1e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24780 85 / 7e-21 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G24770 79 / 2e-18 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT1G04040 74 / 9e-17 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 74 / 2e-16 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007939 [exp] 117 / 4e-33 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 117 / 4e-33 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 110 / 1e-30 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 107 / 2e-29 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 100 / 4e-27 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 96 / 6e-25 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 90 / 2e-22 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 89 / 2e-22 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10021379 [exp] 56 / 6e-10 AT3G52820 97 / 2e-24 purple acid phosphatase 22 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191000 [exp] 181 / 4e-58 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 122 / 5e-35 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 110 / 1e-30 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 103 / 2e-28 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 102 / 2e-27 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 91 / 6e-23 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 85 / 8e-21 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10006849 pacid=23144409 polypeptide=Lus10006849 locus=Lus10006849.g ID=Lus10006849.BGIv1.0 annot-version=v1.0 ATGGCCTCTCCATTTACCAGGGTGGAGGTGTTTAACGCAACAGCATTCAACAAATGGGTGATGGAAGGGAAAGCAGTGGTGTTACCAGCGAGCTTCAAAC TGTACAAGAAACTAGTGGCAACGGGGATCAAGCCAGACTTCTTAACTGGAAGAACAGAAGACCAAACATCCGTCACTCAAATCAACCTTAAAAATGTCGG ATACAACACTTGGGAAAAGCTCATCCTCAAATCGACGATCTACTCAGGGAACTCGTCGATGTGGTACAAGTTGAGCGAGAGGGGGAAGCTGGAGAAGGAA GGGTACATGATCGTGGGGAACATCGGGGATCAATGGAGCGACCTTTTGGGTTCGAGCGCTGGATTTCGTACTTTGAAGCTCCCTGATCCTATGCGCTACA TTAGCTAG
AA sequence Show only first row Show all	>Lus10006849 pacid=23144409 polypeptide=Lus10006849 locus=Lus10006849.g ID=Lus10006849.BGIv1.0 annot-version=v1.0 MASPFTRVEVFNATAFNKWVMEGKAVVLPASFKLYKKLVATGIKPDFLTGRTEDQTSVTQINLKNVGYNTWEKLILKSTIYSGNSSMWYKLSERGKLEKE GYMIVGNIGDQWSDLLGSSAGFRTLKLPDPMRYIS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	1.0	0.9668
					Lus10042813 [exp]	3.5	0.9337
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	4.2	0.9191
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	5.3	0.9326
					Lus10006993 [exp]	6.4	0.8697
					Lus10012313 [exp]	6.6	0.9127
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	6.6	0.9348
					Lus10008233 [exp]	7.4	0.9323
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10003642 [exp]	12.7	0.8890
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	14.7	0.8815

Compare expression of checked genes

Lus10006849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.