Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51965 757 / 0 ABO5 ABA Overly-Sensitive 5 (.1) AT3G04760 201 / 3e-56 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G31840 203 / 1e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G31850 203 / 6e-55 PGR3 proton gradient regulation 3 (.1) AT1G63130 196 / 6e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 194 / 8e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63400 194 / 1e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 191 / 1e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 194 / 2e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 193 / 2e-52 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037592 [exp] 1258 / 0 AT1G51965 792 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10014660 [exp] 196 / 1e-54 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10043417 [exp] 197 / 4e-53 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 196 / 8e-53 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 195 / 3e-52 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10000554 [exp] 186 / 6e-51 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027914 [exp] 188 / 1e-50 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 189 / 2e-50 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 186 / 6e-50 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105000 [exp] 896 / 0 AT1G51965 855 / 0.0 ABA Overly-Sensitive 5 (.1) Potri.005G050400 [exp] 207 / 2e-58 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G264800 [exp] 209 / 4e-57 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G036400 [exp] 207 / 7e-57 AT1G31840 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G050180 [exp] 203 / 9e-57 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 201 / 8e-56 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 200 / 1e-55 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G047000 [exp] 199 / 1e-55 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050500 [exp] 199 / 1e-55 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 199 / 5e-55 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10006850 pacid=23144424 polypeptide=Lus10006850 locus=Lus10006850.g ID=Lus10006850.BGIv1.0 annot-version=v1.0 ATGCCATTCAAAAGGGCTAGTTACAGGACCTTCTGTAGAAAATTTAGGGAAGTTAATGGCCAAGTCGATGCCTTTCGATGTTATTCCACAAGCTACACGG CCAAAGTTACCTCTGCATCTCCAACAGGCCGAGTTCTGTCAGCTGAGGTCTCTCCTCCGTATACTCTCGATCCCCGAGGCTATGCTCTCCCTCGACGCCA GCTCGTTTGTAAAGTCACTCAGCTCCTTCGCCACTCTGATGATGGGAAATCATCTCACAAACCGAAGCTCAACCCGGTGCTCCAACTCGAGGATTACTTC TCATCACATGATTCCATCACCCTCACATCCGAAGAAGTCTGCGAGATTATGAAATCCATAAACTCACCTTCGCTGGCCATCAAGTTCTTCCAGTTCTGCC CCAAGCTCTCCCCTAAATTCCGGCACAACTGCTACACCTACACTAGGCTAATCCTCATCCTTTCGAAATCGAATCTACTGGACAAGCTGGATCTTGTTAG GGAAACGGTTTCTGAGATGGAGAAGACTGGGATTCGTGGGTCGATATCTACTGTCAATATTTTGATAGGGTGCTTTGGGGAAGGGCGGGGGGATCTTGAG AAGTGTATGGAGCTGGTGAAGAATTGGGGGTTGAAGATGACTGCCTATACTTACAAGTGTTTGGTTCAAGCATATCTTAGGTCGTATGATACCGCGAAAG GGTTGAGGGTTTACGAAAAGATGAAGAGTGAAGGGTTTAAGCTTGATGTTTTTGCCTACAATATGCTCTTGAATGCTTTAACCAAAGATGGCATGGTTAA CGAGGCGTGCTTGGTTTTCAACGACATGAAAAAGAACCACTGCATGCCAGATGAGTATACTTACACAATCATGATCAAACTGTCCGGGAAGACCGGCAAA CAACACGAAGCATTGGCTCTCTTCGAGGAAATGTTAACTAATGGCTATTCTCCGAACATAATCGCTTACAATACGATGCTCCTGGCGCTCACCAACAGTA GAATGGTCGACAAGGCGATCCTCCTCTTCTCCAAGATGGTGGAGAAAGGTTGTCGCCCGAATGAATACACGTATCATCTAGTCCTGAACTTGCTTGCAGC AGAAGGAAAGCTTCACAGGCTAGACGATCTCATTGAGCTGTCGAAGAAATACATGACGAGATCGATTTACGCCTACCTCGTGAGAACATTAAGTAAACTA GGGCATGCGAGCGAGGCTCACCGGTTTTTCTGCAAGTTATGGAGTTTCCATGATAAAGGAGATAAGAATGCATGTATTTCAATGCTGGAGAGTCTGTGTA GTGTTGGGAAAACAACCGAGGCGATTGACTTGCTCGACAAGCTTCACGAGAAAGATGTGGATACCGATACTGCAATGTATAACGTGGTGCTCACTACGCT TGGGAAGTCGAAGGAGAGAATATCTCATCTTGATGATTTATACAAAAGGATGAAGAGAGACGGTCCAATACCGGATACTTTCACGTATAATATTATGATC TCGAGCTTCGGTAGGGTGGGGAGGGTTGACGATGCTGTTCGAATATTCGACGAGCTCGAGAGCAGTGAATGCATACCGGATATAATCTCGTACAACTCGT TGATCAACTGTCTGGGAAAGAACGGTGATGTCGATGCAGCTCACATGAAGTTTCGAGAAATGCGGGAGAAGGGGCTGGATCCGGATGTTGTGACGTATAG CACGCTTATCGAGTGTTTTGGGAAGACGGAGAAAGTCGAGATGGCGTGCAGACTGTTCGATGAGATGCTTGCAGAAGGCTGCTACCCGAATATTGTGACG TACAACATTCTACTTGACTGTCTTGAGAGGAGTGGCAGGACTACTGAGGCTGTTGATCTATATGCTAAGCTTAAACAGAATGGGTTAACGCCCGATTCGA TCACTTATGCGGTTCTCGAACGGTTGCAGAATGGCTCCGGCAGGAAGTTTAGAGTCCGTAGGCAGCATCCGATCACTGGCTGGGTTGTTAGCCCATTATG A
AA sequence Show only first row Show all	>Lus10006850 pacid=23144424 polypeptide=Lus10006850 locus=Lus10006850.g ID=Lus10006850.BGIv1.0 annot-version=v1.0 MPFKRASYRTFCRKFREVNGQVDAFRCYSTSYTAKVTSASPTGRVLSAEVSPPYTLDPRGYALPRRQLVCKVTQLLRHSDDGKSSHKPKLNPVLQLEDYF SSHDSITLTSEEVCEIMKSINSPSLAIKFFQFCPKLSPKFRHNCYTYTRLILILSKSNLLDKLDLVRETVSEMEKTGIRGSISTVNILIGCFGEGRGDLE KCMELVKNWGLKMTAYTYKCLVQAYLRSYDTAKGLRVYEKMKSEGFKLDVFAYNMLLNALTKDGMVNEACLVFNDMKKNHCMPDEYTYTIMIKLSGKTGK QHEALALFEEMLTNGYSPNIIAYNTMLLALTNSRMVDKAILLFSKMVEKGCRPNEYTYHLVLNLLAAEGKLHRLDDLIELSKKYMTRSIYAYLVRTLSKL GHASEAHRFFCKLWSFHDKGDKNACISMLESLCSVGKTTEAIDLLDKLHEKDVDTDTAMYNVVLTTLGKSKERISHLDDLYKRMKRDGPIPDTFTYNIMI SSFGRVGRVDDAVRIFDELESSECIPDIISYNSLINCLGKNGDVDAAHMKFREMREKGLDPDVVTYSTLIECFGKTEKVEMACRLFDEMLAEGCYPNIVT YNILLDCLERSGRTTEAVDLYAKLKQNGLTPDSITYAVLERLQNGSGRKFRVRRQHPITGWVVSPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51965		ABO5	ABA Overly-Sensitive 5 (.1)		Lus10006850 [exp]	0	1
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025131 [exp]	7.9	0.8755
AT2G41460		ARP	apurinic endonuclease-redox pr...		Lus10000437 [exp]	12.5	0.8609
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	16.4	0.8747
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	20.8	0.8507
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	25.0	0.8497
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	32.1	0.8492
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10003343 [exp]	34.5	0.8467
AT1G32420			F-box and associated interacti...		Lus10018969 [exp]	36.2	0.8353
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	47.2	0.8457
AT5G46920			Intron maturase, type II famil...		Lus10011050 [exp]	49.5	0.8379

Compare expression of checked genes

Lus10006850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.