Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 704 / 0 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 684 / 0 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G26900 596 / 0 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 594 / 0 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 577 / 0 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G27945 461 / 6e-161 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13840 328 / 5e-108 FZR3 FIZZY-related 3 (.1.2) AT4G22910 325 / 8e-107 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT4G11920 316 / 2e-103 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT1G11160 82 / 3e-16 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037593 [exp] 851 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 847 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 674 / 0 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 635 / 0 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 569 / 0 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037595 [exp] 424 / 2e-149 AT4G33270 402 / 2e-141 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 335 / 8e-108 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10043009 [exp] 324 / 7e-107 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10025838 [exp] 305 / 7e-103 AT4G33270 295 / 3e-99 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118400 [exp] 719 / 0 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 712 / 0 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 708 / 0 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 617 / 0 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 351 / 3e-117 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 328 / 5e-108 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 319 / 2e-104 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 315 / 4e-103 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 311 / 2e-101 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.008G002300 [exp] 83 / 1e-16 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10006851 pacid=23144387 polypeptide=Lus10006851 locus=Lus10006851.g ID=Lus10006851.BGIv1.0 annot-version=v1.0 ATGAACACCAGATTTCCACTCCAGAGAAAGAGTTCCAAGGATAACCTGGACAGGTTCATTCCGAATCGGTCAGCTATGGACATGGATTACGCCCACTACA TGGCCACAGAAGGATGGAAAGAACCGGAGAATCCAGTCCCCAGTTCCCCTTCAAGCGAGGCTTACAAGAGACTGCTGGCGGAGACTATGAACTTGAATCG GACAAGGATCTTGGCGTTCAAGAACAAGCCTCCTACTCCTGTTGAATTGATCCCGCATTTCCACACTTCTTCTTCAGATTCATCTCTTCCTCACCAGATG AAACCAGCCAAGCCTCGCAGACACATTCCTCAGACTTCAGAGAGGACATTGGATGCTCCCGACCTTGTGGATGATTTTTACTTGAACTTACTGGACTGGG GAAGCAGCAATGTTCTTGCAATAGGATTGGGAAGTACTGTTTATCTCTGGGGCGCTTCCAATGGCTCTACTTCCGAGCTTGTCACTGTCGATGAAGAACT CGGCCCTGTGACTAGCGTTAACTGGGCTCCCGATGGACAGAATATCGCTATTGGTTTGAACAACTCTGAAGTCCAACTGTGGGATTCTACTTCTAACAAA CTGCTAAGAACATTGAGAGGCGGCCATAGATGCAGAGTCGGGTCATTGGCATGGAACAACCACATCTTAACCACTGGAGGAATGGATGGAAGGATTATAA ACAACGATGTCCGAATCCGAAAACACATAGTTGAAACATACAGAGGCCACACGCAAGAAGTCTGCGGATTGAAATGGTCAGCTTCAGGTCAACAACTAGC AAGCGGAGGAAACGATAATCTGGTTCATATCTGGGACAGATCCATGGCTTCTTCCAACTTGCCAACTCAGTATCTTCACCGACTCGAAGACCATACATCA GCTGTAAAGGCTCTAGCTTGGTGTCCGTTTCAAGGAAACTTGCTCGCGACGGGAGGCGGTGGAGGAGACAGGACGATCAAGTTCTGGAACACTCATACCG GTGCGTGCTTGAACTCGGTGGACACTGGATCCCAGGTGTGTGCGCTGCTGTGGAACAAGAACGAGAGGGAGCTTCTGAGCTCTCATGGGTTTACTCAGAA TCAGCTTACCTTGTGGAAGTATCCGTCCATGGTGAAGACTGCAGAGCTTACTGGCCACACCTCCAGGGTTTTGTTCATGGCTCAGAGTCCCAATGGGTGC ACTGTGGCGTCAGCAGCAGGGGATGAAACTCTGAGGTTCTGGAACGTGTTTGGGGATCCTGAAGCTGCTAAGAAATCTGCTCCTAAAGCCAACCCCGAGC CGTTCGCTTTGGCCAATCGCATCCGCTGA
AA sequence Show only first row Show all	>Lus10006851 pacid=23144387 polypeptide=Lus10006851 locus=Lus10006851.g ID=Lus10006851.BGIv1.0 annot-version=v1.0 MNTRFPLQRKSSKDNLDRFIPNRSAMDMDYAHYMATEGWKEPENPVPSSPSSEAYKRLLAETMNLNRTRILAFKNKPPTPVELIPHFHTSSSDSSLPHQM KPAKPRRHIPQTSERTLDAPDLVDDFYLNLLDWGSSNVLAIGLGSTVYLWGASNGSTSELVTVDEELGPVTSVNWAPDGQNIAIGLNNSEVQLWDSTSNK LLRTLRGGHRCRVGSLAWNNHILTTGGMDGRIINNDVRIRKHIVETYRGHTQEVCGLKWSASGQQLASGGNDNLVHIWDRSMASSNLPTQYLHRLEDHTS AVKALAWCPFQGNLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKTAELTGHTSRVLFMAQSPNGC TVASAAGDETLRFWNVFGDPEAAKKSAPKANPEPFALANRIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	0	1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	1.4	0.9756
AT1G49870			unknown protein		Lus10002116 [exp]	2.0	0.9754
AT3G03130			unknown protein		Lus10009977 [exp]	3.0	0.9741
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10020573 [exp]	4.0	0.9502
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	4.2	0.9704
AT5G17160			unknown protein		Lus10038036 [exp]	4.5	0.9704
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	5.7	0.9704
AT4G15830			ARM repeat superfamily protein...		Lus10034168 [exp]	5.7	0.9611
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	7.3	0.9601
AT3G12870			unknown protein		Lus10031776 [exp]	8.4	0.9544

Compare expression of checked genes

Lus10006851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.