Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 717 / 0 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 699 / 0 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G26900 601 / 0 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27080 597 / 0 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 583 / 0 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT2G17420 509 / 8e-175 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 502 / 3e-172 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT5G27945 467 / 8e-158 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13840 331 / 2e-104 FZR3 FIZZY-related 3 (.1.2) AT4G22910 327 / 5e-103 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037593 [exp] 884 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 874 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10034687 [exp] 691 / 0 AT4G33270 620 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 654 / 0 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 569 / 0 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10025845 [exp] 469 / 2e-160 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038256 [exp] 466 / 4e-160 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10037595 [exp] 432 / 2e-147 AT4G33270 402 / 2e-141 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10043009 [exp] 334 / 7e-106 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048900 [exp] 738 / 0 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 735 / 0 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G118400 [exp] 734 / 0 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 634 / 0 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.001G456800 [exp] 548 / 0 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 530 / 0 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.015G110300 [exp] 361 / 4e-116 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 335 / 3e-106 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 327 / 4e-103 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 318 / 2e-99 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10006853 pacid=23144404 polypeptide=Lus10006853 locus=Lus10006853.g ID=Lus10006853.BGIv1.0 annot-version=v1.0 ATGGTGAGACAGTTGCCAATTTCCTTATCATACTTTTGCCATAGAAATTTCCACATACGACAAATGCGACCAACCATTCCCGGCAAATTTGGAACTCTCT TCTCCAAAGCTCGCTTCTTGATCGGCCGCTCCACCACCTCCGCTGCCACATCCACCACCTCCGCTGCCACATCCACCGCCGCTTCTTCTTCTCCTCCTGC TCCCCTCATGGAAGAGCTCAGAGCCCGCGTCTGCATCATCGGGAGCGGCCCAGCCGCCCACACGGCGGCAATCTACGCCGCCAGGGCGGCGGCAATCTCC GCTGCCAGGGCGGAGCTGAAGCCGATCCTCTTCGAAGGCTTTATGGCGAACGACATCGCCCCCGGAGGCCAGCTCACCACCACCACCGACGTCGAGAACT TTCCGGGATTCCCCGACGGGATCATGGGCGGGGAGCTCATGGACAAGTGCCGCGCGCAGTCACTCCGATTCGGCACCCAGGTCTTCACCGAAACGGTCAA CAAAGTCGACTTCTGCTCCTCCCCGTTCAAGATCCTCACCGACTCCAAATCCGTCTCCGCCGACGCCGTAATCGTCGCCACCGGTGCCGTCGCCAAGCGG CTCCAGTTCCCCGGATCCGAGACGTACTGGAACCGCGGGATCTCCGCCTGCGCTGTGTGCGACGGCGCCGCCCCGATCTTCCGCGACAAGCCGCTGGCGG TGATCGGAGGCGGCGATTCGGCAATGGAGGAGGCGAATTTCTTGACGAAGTACGGTAGCAAGGTTTACATCATCCATCGCAGGGATACTTTTAGAGCTTC GAAGATAATGCAGAACAGGGCGATGAAGAACCCTAAGATTGAGGTGATTTGGAATTCGGTAACGGAGGAGGCCTATGGTGAGAAGTCGCTCAAAGGATTG AAGGTGAAGAACATTGTTAGCGGTGAGGTTTCTGATTTGACAGTTTCCGGGTTGTTCTTCGCCATTGGACATGAGCCTGCTACTAAGTTCTTGGATGGGC AGCTTGAGGTTCACTCTGATGGATACGTTGTGACGAAGCCTGGAACTACGCAGACTAGTGTTAAGGGTGTTTTTGCTGCTGGTGATGTTCAGGATAAGAA GTATAGGCAGGCCATTACTGCTGCTGGCACTGGGTGCATGGCGGCGCTGGAAGCGGAGCATTACTTGCAAGAGATTGGCGCCCAGGAGGATAAGAGATCA GCCACTATGAACACCAGATTCCCTCTCCAGAGAAGAAGCTCCAAGGAGAATCCGGACAGGTTCATTCCCAATCGATCGGCGATGGACATGGATTACGCTC ACTACATGGCCACGGAAGGATGGAAAGAACAGGAGAATCCAGTACCCAGTTCCCCTTCAAGCGAGGCTTACAAGAGACTGCTGGCGGAGACTATGAACTT GAATCGGACAAGGATCTTGGCGTTCAAGAACAAGCCTCCAACTCCAGTTGAATTGATCCCGCATTTCCACACTTCTTCTTCAGATTCATCTCACCGTGCG AAACCAGCCAAGGCTCGCAGACACATTCCTCAGACTTCAGAGAGAACATTGGATGCTCCCGACCTTGTGGATGATTTTTACTTGAACTTGCTCGATTGGG GAAGCAGCAATGTTCTGGCAATAGGATTAGGAAGTACTGTTTATCTCTGGGATGCTTCAAATGGCTCTACTTCCGAGCTTGTCACCGTTGATGAAGAACT CGGCCCTGTGACCAGCGTTAACTGGGCTCCCGATGGACAGAATATCGCTATTGGTTTGAACAACTCTGAAGTCCAACTGTGGGATTCTACTTCTAACAAA CTGTTGAGAACATTGAGAGGCGGCCACAGATGCAGAGTCGGGTCATTGGCATGGAACAACCACATTCTAACCACCGGAGGAATGGATGGAAGGATTATAA ACAACGATGTCCGAATCAGAAATCACATAGTTGAAACATACAGAGGCCACACGCAAGAAGTCTGCGGACTGAAATGGTCAGCTTCAGGCCAACAACTAGC AAGCGGAGGCAACGACAATCTCGTCCATATCTGGGACAGATCCATGGCTTCTTCCAACTCGCCAACTCAGTATCTTCACAGGCTCGAGGACCATACATCG GCAGTAAAGGCTCTAGCTTGGTGTCCGTTCCAAGGGAACTTGCTAGCGACAGGTGGCGGCGGTGGGGACAGGACAATCAAGTTCTGGAACACTCATACCG GTGCTTGCTTGAACTCGGTGGACACTGGATCTCAGGTGTGTGCGCTGCTGTGGAACAAGAATGAGAGGGAGCTTCTGAGCTCTCATGGGTTTACGCAGAA TCAGCTTACTTTGTGGAAGTATCCGTCAATGGTGAAGACTGCTGAGCTTACTGGTCATACCTCCAGGGTGTTGTTCATGACTCAGAGTCCTGATGGGTGC ACTGTGGCGTCTGCAGCCGGGGATGAAACTCTAAGGTTCTGGAACGTGTTTGGGGATCCTGAAGCTGCTAAGAAATCTGCTCCCAAAGCCAATCCCGAGC CGTTTGCCTGGGCCAATCGCATCCGGTGA
AA sequence Show only first row Show all	>Lus10006853 pacid=23144404 polypeptide=Lus10006853 locus=Lus10006853.g ID=Lus10006853.BGIv1.0 annot-version=v1.0 MVRQLPISLSYFCHRNFHIRQMRPTIPGKFGTLFSKARFLIGRSTTSAATSTTSAATSTAASSSPPAPLMEELRARVCIIGSGPAAHTAAIYAARAAAIS AARAELKPILFEGFMANDIAPGGQLTTTTDVENFPGFPDGIMGGELMDKCRAQSLRFGTQVFTETVNKVDFCSSPFKILTDSKSVSADAVIVATGAVAKR LQFPGSETYWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDTFRASKIMQNRAMKNPKIEVIWNSVTEEAYGEKSLKGL KVKNIVSGEVSDLTVSGLFFAIGHEPATKFLDGQLEVHSDGYVVTKPGTTQTSVKGVFAAGDVQDKKYRQAITAAGTGCMAALEAEHYLQEIGAQEDKRS ATMNTRFPLQRRSSKENPDRFIPNRSAMDMDYAHYMATEGWKEQENPVPSSPSSEAYKRLLAETMNLNRTRILAFKNKPPTPVELIPHFHTSSSDSSHRA KPAKARRHIPQTSERTLDAPDLVDDFYLNLLDWGSSNVLAIGLGSTVYLWDASNGSTSELVTVDEELGPVTSVNWAPDGQNIAIGLNNSEVQLWDSTSNK LLRTLRGGHRCRVGSLAWNNHILTTGGMDGRIINNDVRIRNHIVETYRGHTQEVCGLKWSASGQQLASGGNDNLVHIWDRSMASSNSPTQYLHRLEDHTS AVKALAWCPFQGNLLATGGGGGDRTIKFWNTHTGACLNSVDTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMVKTAELTGHTSRVLFMTQSPDGC TVASAAGDETLRFWNVFGDPEAAKKSAPKANPEPFAWANRIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006853 [exp]	0	1
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	3.9	0.9205
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	7.1	0.9130
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	11.3	0.9202
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	13.3	0.9008
AT4G35730			Regulator of Vps4 activity in ...		Lus10041836 [exp]	13.7	0.9130
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	19.7	0.9067
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10041262 [exp]	21.7	0.8371
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014236 [exp]	22.9	0.9015
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037595 [exp]	23.5	0.8987
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	25.5	0.9095

Compare expression of checked genes

Lus10006853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.