Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16370 422 / 5e-148 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 362 / 8e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 363 / 9e-125 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 358 / 8e-123 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 324 / 2e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 249 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 246 / 7e-79 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45960 239 / 3e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 235 / 1e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G63170 232 / 1e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006856 [exp] 549 / 0 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 545 / 0 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008639 [exp] 345 / 6e-118 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008635 [exp] 335 / 7e-114 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 335 / 1e-113 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 314 / 7e-106 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 312 / 2e-105 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10003720 [exp] 247 / 3e-79 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 247 / 5e-79 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191400 [exp] 453 / 3e-160 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 374 / 2e-129 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 367 / 9e-126 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 364 / 3e-125 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.006G144400 [exp] 342 / 4e-117 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 244 / 2e-78 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 244 / 3e-78 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.002G219700 [exp] 241 / 1e-76 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 235 / 9e-75 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 233 / 2e-73 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10006855 pacid=23144425 polypeptide=Lus10006855 locus=Lus10006855.g ID=Lus10006855.BGIv1.0 annot-version=v1.0 ATGGCGTCTATGGTGACGTCATTGCTCTGCTTCTTCTTCTGCACTTTTCTTCTGCAGGTTCTTCATGCACAGGAGGAGAGCAGTACAATTGTTCCTGGGC TCATGTTATTTGGTGACTCAGCTGTTGATGTTGGGAACAATGACTACATTCCAGCTCTGTTCAAGGCCAACTACCCTCCTTATGGCAGAGATTTCGTCAG ACATAAGCCTACTGGCAGGTTCTCCAATGGCAAATTGGCTACTGACATTACTGCTGAAACACTGGGATTCAAGACATACCCACCAGCATATCTCAGCCCC GATGCAACAGGGAACAACCTCCTAACTGGTGCCAACTTTGCATCCGCTGCTGCCGGATTCGACGAGAAGGTTGCTTCCCTCAAGCATGCGATTACTCTAC CGCAACAGCTCGAGCTGTTCAAGGAGTACAAAGGGAAGCTAGCCAAAGTTGCTGGTGCCAACAGATCAGCCACCATAATCAGAGACTCATTGTACATACT TGGTGCTGGAACCAGTGATTTCCTACAAAATTACTATGTTAACCCTTTGGTCAACAAGGTCTATACCCCTGACCAGTACGGCTCGTTGCTCATCCCCGCT TTGGAGTCCTTCGTCAAGGGATTGTACAACCTGGGAGGGAGAAGGCTCGGCGTGACTTCGTTGTTGCCGCTCGGCTGTGTACCGGCTGTCAGGACAATAT TTCGTTACCGCAAGCAAGGGTGTGTCTCGAGAATCAATAGGGACGCCCTGTTGTTCAACAAGAAAGTCGCCTCTGCAGCAGCTGTTCTGCAGAGGCAACT TCCGGGGATGAAGATTGTCGCGTTCGACATCTTCAAGCCCCTCCACGACCTTATCAGGAAGCCCTCCGACTTCGGCTTCGTGGAGACACGGAGAGGGTGC TGCGGAACGGTGACTGCAGGGACGGTGGGGGCTGCGTTTTTTCTGTGCAACCCCAAGTCGACTGGAACGTGCCGGAATGCGACGCAGTATGTGTTCTGGG ATAGCGTCCATCCATCTGAGGCTGCTAATCAAGCTATTGCTGAGGCTGTCCTCCTACAGGGGATCCCCCTCATTGGATGA
AA sequence Show only first row Show all	>Lus10006855 pacid=23144425 polypeptide=Lus10006855 locus=Lus10006855.g ID=Lus10006855.BGIv1.0 annot-version=v1.0 MASMVTSLLCFFFCTFLLQVLHAQEESSTIVPGLMLFGDSAVDVGNNDYIPALFKANYPPYGRDFVRHKPTGRFSNGKLATDITAETLGFKTYPPAYLSP DATGNNLLTGANFASAAAGFDEKVASLKHAITLPQQLELFKEYKGKLAKVAGANRSATIIRDSLYILGAGTSDFLQNYYVNPLVNKVYTPDQYGSLLIPA LESFVKGLYNLGGRRLGVTSLLPLGCVPAVRTIFRYRKQGCVSRINRDALLFNKKVASAAAVLQRQLPGMKIVAFDIFKPLHDLIRKPSDFGFVETRRGC CGTVTAGTVGAAFFLCNPKSTGTCRNATQYVFWDSVHPSEAANQAIAEAVLLQGIPLIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006855 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	2.2	0.9363
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	3.7	0.9308
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	4.2	0.9257
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10040796 [exp]	4.5	0.9117
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	5.7	0.9225
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	7.9	0.9085
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	8.5	0.9048
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	8.8	0.9109
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10024228 [exp]	9.9	0.8966
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10001153 [exp]	10.4	0.8840

Compare expression of checked genes

Lus10006855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.