Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16370 452 / 6e-160 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 393 / 5e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 371 / 4e-128 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 364 / 2e-125 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G53100 333 / 2e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 254 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 242 / 4e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 236 / 6e-75 SGNH hydrolase-type esterase superfamily protein (.1) AT5G63170 229 / 6e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 229 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037598 [exp] 620 / 0 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006855 [exp] 519 / 0 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008639 [exp] 357 / 2e-122 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008635 [exp] 350 / 6e-120 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 347 / 2e-118 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035590 [exp] 327 / 6e-111 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10035585 [exp] 316 / 8e-107 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10034540 [exp] 248 / 8e-80 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 247 / 2e-79 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191400 [exp] 484 / 1e-172 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 394 / 7e-137 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 387 / 7e-134 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 382 / 1e-132 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.006G144400 [exp] 350 / 2e-120 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 251 / 8e-81 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 249 / 3e-80 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 238 / 6e-76 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 237 / 1e-75 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.011G061900 [exp] 235 / 1e-74 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10006856 pacid=23144386 polypeptide=Lus10006856 locus=Lus10006856.g ID=Lus10006856.BGIv1.0 annot-version=v1.0 ATGGCGGCAATGATGATGACTTCATTGCTCTTCTTCATCCTCTGCAACTCTCTGCTTCTGGGTAATTTTGGCCATGCACAGGAGAGCACAACGCTTGTCC CTGCGTTGATATTATTTGGAGACTCGGCCGTTGATGTTGGCAACAATGACTACCTACCAACTCTGTTCAAGGCCAATTACCCTCCTTATGGCAGAGATTT TGTCACCCACCAGCCTACTGGCAGGTTCTGCAATGGCAAATTGGCTACTGATATCACTGGTGAAACACTGGGATTCAAGACATACCCGCCAGCATATCTG AGCCCAGATGCCACAGGGAACAACCTCCTCACTGGAGCCAACTTCGCATCGGCTGCATCTGGGTTCGACGAGAAAGCCGCTTCCCTCAATCATGCAATTA CTCTGCCACAGCAGCTGGAGCTGTTCAAGGAGTACAAAGGGAAGCTAGCCAAAGTTGCTGGTGCCAAAAAATCGGCCACAATCATCAGCGACTCGCTATA TCTACTGAGCGCCGGAAGCAGTGACTTCCTGCAGAATTACTATGTTAACCCTTTGCTGAACAAGGTCTACACCCCCGACCAGTACGGCTCGTTGCTCATC TCCTCTTTCAACTCCTTCGTCAAGGGACTATACAACCTGGGAGGGAGAAGGCTCGGCGTGACATCGCTCCCTCCACTTGGGTGCCTACCGGCCGCCAGGA CAATATTCGGCTACCACGAGCAAGGGTGCGTGTCGAGAATCAACACGGACGCCCAGCAGTTCAACAAGAAGGTCACCTCCGCAGCGGCATCGCTGCAGAA GCAGCTACCGGGGATGAAGATCGTTGTGCTCGACATCTTCAAGCCCCTCTACGACGTCGTCAAGAAGCCCTCCGACTTCGGCTTCGCGGAGGCAAGAAGA GGGTGCTGCGGGACCGGGACGGTGGAGACTACGGTGCTTCTGTGCAACCCGAAATCGATCGGGACGTGCCCAAATGCGACACAATATGTGTTCTGGGACA GTGTCCACCCTTCTGAGGCTGCTAATCAAGTGCTAGCTGATGCCCTCCTTGTACAGGGGATTTCCCTCATTGGATGA
AA sequence Show only first row Show all	>Lus10006856 pacid=23144386 polypeptide=Lus10006856 locus=Lus10006856.g ID=Lus10006856.BGIv1.0 annot-version=v1.0 MAAMMMTSLLFFILCNSLLLGNFGHAQESTTLVPALILFGDSAVDVGNNDYLPTLFKANYPPYGRDFVTHQPTGRFCNGKLATDITGETLGFKTYPPAYL SPDATGNNLLTGANFASAASGFDEKAASLNHAITLPQQLELFKEYKGKLAKVAGAKKSATIISDSLYLLSAGSSDFLQNYYVNPLLNKVYTPDQYGSLLI SSFNSFVKGLYNLGGRRLGVTSLPPLGCLPAARTIFGYHEQGCVSRINTDAQQFNKKVTSAAASLQKQLPGMKIVVLDIFKPLYDVVKKPSDFGFAEARR GCCGTGTVETTVLLCNPKSIGTCPNATQYVFWDSVHPSEAANQVLADALLVQGISLIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	0	1
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Lus10006678 [exp]	1.4	0.9383
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	1.7	0.9294
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	2.4	0.9138
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	2.4	0.9359
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	4.0	0.9251
AT2G21080			unknown protein		Lus10036448 [exp]	4.0	0.9118
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	5.5	0.9175
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	5.9	0.9121
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	6.0	0.9046
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	6.9	0.8884

Compare expression of checked genes

Lus10006856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.