Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51760 582 / 0 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT1G51780 522 / 0 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56660 483 / 6e-170 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT5G56650 469 / 3e-164 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT3G02875 363 / 8e-123 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G54140 360 / 8e-122 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1) AT1G44350 358 / 1e-120 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037601 [exp] 785 / 0 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10009737 [exp] 456 / 4e-161 AT1G51760 466 / 1e-164 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 449 / 9e-157 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 448 / 3e-156 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10010715 [exp] 427 / 7e-148 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10029200 [exp] 416 / 2e-143 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10025668 [exp] 389 / 1e-132 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10032963 [exp] 375 / 1e-127 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10022761 [exp] 370 / 1e-125 AT3G02875 489 / 3e-172 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045200 [exp] 630 / 0 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.010G035900 [exp] 431 / 5e-149 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 426 / 8e-147 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.002G082400 [exp] 426 / 9e-147 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.016G074100 [exp] 399 / 1e-136 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 388 / 2e-132 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.012G007400 [exp] 387 / 3e-132 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207400 [exp] 382 / 2e-130 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.006G207300 [exp] 378 / 8e-129 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10006864 pacid=23144428 polypeptide=Lus10006864 locus=Lus10006864.g ID=Lus10006864.BGIv1.0 annot-version=v1.0 ATGAAATTTCTCAACAGGATTTCTCTGGTTCTACTCCTGCTCTCCCACTCGTTTCTGGGAATCAGTCTCTGCTCCTCATCGGGGGACTTCTCAAAGAGGT TTCTCAGTTTCGCGAAGGAAGACGGATTCTTCGATTGGATGGTCGGTGTGAGGAGGAAGATACACGAAAATCCTGAATTGGGTTATGAGGAATTCGAGAC CAGTAAGCTGATTAGAGCGGAGCTGGATAAACTGGGCGTCGAGTATAAGTACCCTCTAGCTGTTACTGGTATTGTTGGGTTCATTGGAACTGGAAAGGCT CCCTTTGTTGCCTTGCGAGCTGATATGGATGCTCTCGCTATGCAGGAAATGGTTGAATGGGAGCACAAGAGTAAGGTTCCTGGAAAGATGCATGCTTGTG GCCACGATGCTCACGTGGCAATGCTCCTTGGTGCAGCAAAGATCCTTCAAGAGCATCGAGACGAATTGAAGGGCACAGTAGTCCTCCTCTTTCAACCGGC GGAGGAAGGAGGAGGCGGCGCGAAGAAAATGATTGATGCCGGAGCCTTAGACAACGTGAATGCAATCTTCGGACTACATGTCGACACAAAGTTGCCCCTA GGCGAAGTGGCTTCGAGATCCGGCCCCATACTTGCAGGCAGTGGAATGTTCGAAGCTGTGATTGGAGGGAAAGGTGGCCATGCTGCTATCCCACAGCATT CTATTGATCCGATCCTGGCTGCCTCCAACGTCGTTGTCAGCTTACAACATCTCGTTTCGCGCGAAGCTGATCCGCTAGACTCTCAGGTTGTTACAGTAGC AAAGTTCCAAGGTGGTGGTGCATTCAACGTGATCAAGGGCCAGGCAGCGGTGCAAAGGTGCACAGCGAGCATCGACTTCCTCGAACTCGAGAAGCCAACC TTCCCTCCGACGGTGAACCACAAGGACCTTCACGAATACTTCAAGACCGTTGCCTCAGATATGCTAGGAGGTGCCAGCAAAGTTGCAGAGATGCAGCCTC TGATGGGATCTGAGGATTTCTCCTTCTACCAAGAAGCTATTCCTGGCTACTTCTTCTTTCTCGGCATGCACGATGATGCCCGGAAGAAGCTCGAATCAGG GCACTCGCCATATTTCAAAGTCAACGAAGAAGCACTGCCCTACGGTGCTGCACTTCATGCTTCACTCGCTGCCAGGTACCTCGTCGAATTCGAGCCGAAA AGTTGTAGGCAGGAGCCGAAGCAGAAGCATCACGATGAACTGTAG
AA sequence Show only first row Show all	>Lus10006864 pacid=23144428 polypeptide=Lus10006864 locus=Lus10006864.g ID=Lus10006864.BGIv1.0 annot-version=v1.0 MKFLNRISLVLLLLSHSFLGISLCSSSGDFSKRFLSFAKEDGFFDWMVGVRRKIHENPELGYEEFETSKLIRAELDKLGVEYKYPLAVTGIVGFIGTGKA PFVALRADMDALAMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILQEHRDELKGTVVLLFQPAEEGGGGAKKMIDAGALDNVNAIFGLHVDTKLPL GEVASRSGPILAGSGMFEAVIGGKGGHAAIPQHSIDPILAASNVVVSLQHLVSREADPLDSQVVTVAKFQGGGAFNVIKGQAAVQRCTASIDFLELEKPT FPPTVNHKDLHEYFKTVASDMLGGASKVAEMQPLMGSEDFSFYQEAIPGYFFFLGMHDDARKKLESGHSPYFKVNEEALPYGAALHASLAARYLVEFEPK SCRQEPKQKHHDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	0	1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	1.0	0.9520
AT1G49050			Eukaryotic aspartyl protease f...		Lus10042982 [exp]	2.0	0.9252
AT5G40670			PQ-loop repeat family protein ...		Lus10014572 [exp]	3.9	0.9114
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	7.5	0.9140
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10020019 [exp]	10.0	0.9129
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	12.8	0.8929
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	13.0	0.9153
AT4G17900			PLATZ transcription factor fam...		Lus10000482 [exp]	14.0	0.9162
AT5G35690			unknown protein		Lus10000922 [exp]	14.6	0.8809
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	15.5	0.9154

Compare expression of checked genes

Lus10006864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.