Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28360 287 / 1e-97 Ribosomal protein L22p/L17e family protein (.1) AT1G52370 277 / 7e-94 Ribosomal protein L22p/L17e family protein (.1.2.3) ATCG00810 50 / 2e-07 ATCG00810.1, RPL22 ribosomal protein L22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037603 [exp] 362 / 6e-128 AT4G28360 272 / 1e-92 Ribosomal protein L22p/L17e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G067100 [exp] 318 / 8e-110 AT4G28360 297 / 2e-101 Ribosomal protein L22p/L17e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00237 [flax] [poplar] Ribosomal_L22 Ribosomal protein L22p/L17e
Representative CDS sequence Show only first row Show all	>Lus10006865 pacid=23144399 polypeptide=Lus10006865 locus=Lus10006865.g ID=Lus10006865.BGIv1.0 annot-version=v1.0 ATGGTGGGGTGGCAGAGACAAGTTCTACAGTCATTGTGTCGTCAAGTTGGGAGAAGAGTAGAGGGAAGATCCTCACTTTTCCCTGGCAAATCAGAATGTT TTGAGAGATTTCGGAGTCCTGCATTGCCTTCTCCACTTTATCAGTATCTGCAAAATGCGGGAATCTCCTGCTCAAGGACAATGCTGGCTTATTCCTCGGA GGAGAAACCTATTCCATCCCCATTGACTCCTATGCTCGCTTTAGGTGACGGAAAAGATGAAGAACAGAAGGAGGCCTCCAAACCTGCCAAAGTTCAAGCT GTACTGAAGGGAATAAAGCAGAGTCCCAAGAAGGTAAATTTGGTTGCTGCGCTAGTTCGTGGCATGCGAGTTGAAGATGCATTGTTGCAGCTGCAAGTGA CCGTGAAACGGGCTGCAAAGACCGTTTACCAGGTTATACATTCGGCACGAGCAAATGCAACACACAATCATGGCCTGGATCGAGACCGCCTGCTCGTCGC TGAGGCATTCCTTGGGAAGGGTTACTACAAGAAGAGAGTCTCGTATCATTCCAAAGGGAGGCACGGCATCAAAATGAGACCCGAGTGTCGGTTAACTGTC GTGGTGAGGGAGACAACGCCTGAGGAGGAGGCCAAGATTGCAAGGCTAAAGGTGCACAACTTCCGCAAGCTGAATAAACGAGAGAGCCGACTCGTGCCCC ACAAACTGATCGAGGTTGATCCAGTTTGGGGCCGCAAAGGCAAGAGAGCAAACCAGGAAGCTGCAACTAGGCGAGAGGCTTGA
AA sequence Show only first row Show all	>Lus10006865 pacid=23144399 polypeptide=Lus10006865 locus=Lus10006865.g ID=Lus10006865.BGIv1.0 annot-version=v1.0 MVGWQRQVLQSLCRQVGRRVEGRSSLFPGKSECFERFRSPALPSPLYQYLQNAGISCSRTMLAYSSEEKPIPSPLTPMLALGDGKDEEQKEASKPAKVQA VLKGIKQSPKKVNLVAALVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANATHNHGLDRDRLLVAEAFLGKGYYKKRVSYHSKGRHGIKMRPECRLTV VVRETTPEEEAKIARLKVHNFRKLNKRESRLVPHKLIEVDPVWGRKGKRANQEAATRREA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	1.0	0.9710
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	1.4	0.9659
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Lus10036566 [exp]	2.0	0.9617
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	2.2	0.9604
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035650 [exp]	2.4	0.9631
AT2G03830		RGF8	root meristem growth factor 8,...		Lus10036830 [exp]	4.0	0.9480
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	4.5	0.9472
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	5.7	0.9443
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	6.0	0.9477
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	6.5	0.9412

Compare expression of checked genes

Lus10006865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.