Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73040 153 / 7e-43 Mannose-binding lectin superfamily protein (.1) AT1G19715 90 / 2e-18 Mannose-binding lectin superfamily protein (.1.2.3) AT2G42730 86 / 1e-17 F-box family protein (.1.2) AT3G49150 81 / 1e-15 F-box/RNI-like superfamily protein (.1) AT3G58900 74 / 4e-14 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G59190 73 / 2e-13 F-box/RNI-like superfamily protein (.1) AT5G53840 72 / 4e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G00320 72 / 5e-13 F-box/RNI-like superfamily protein (.1) AT3G58860 71 / 8e-13 F-box/RNI-like superfamily protein (.1) AT3G59200 71 / 1e-12 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037605 [exp] 544 / 0 AT1G73040 198 / 1e-62 Mannose-binding lectin superfamily protein (.1) Lus10037604 [exp] 301 / 1e-98 AT5G53635 54 / 6e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024290 [exp] 113 / 7e-26 AT1G19715 607 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Lus10024291 [exp] 104 / 6e-23 AT1G19715 438 / 1e-146 Mannose-binding lectin superfamily protein (.1.2.3) Lus10042272 [exp] 73 / 2e-13 AT4G03220 65 / 4e-11 Protein with RNI-like/FBD-like domains (.1) Lus10028722 [exp] 71 / 2e-12 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10034414 [exp] 69 / 6e-12 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10010664 [exp] 69 / 9e-12 AT1G61320 125 / 6e-31 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10019144 [exp] 67 / 3e-11 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G140001 [exp] 174 / 3e-50 AT1G73040 214 / 1e-71 Mannose-binding lectin superfamily protein (.1) Potri.001G395000 [exp] 175 / 5e-47 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.012G099400 [exp] 165 / 2e-43 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.013G146800 [exp] 146 / 7e-37 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 120 / 2e-28 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 118 / 7e-28 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.005G232500 [exp] 108 / 2e-24 AT1G19715 486 / 2e-166 Mannose-binding lectin superfamily protein (.1.2.3) Potri.017G146500 [exp] 105 / 5e-24 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.005G232400 [exp] 107 / 9e-24 AT1G19715 609 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3) Potri.002G030400 [exp] 104 / 4e-23 AT1G19715 590 / 0.0 Mannose-binding lectin superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0568 [flax] [poplar] Man_lectin PF01419 [flax] [poplar] Jacalin Jacalin-like lectin domain
Representative CDS sequence Show only first row Show all	>Lus10006866 pacid=23144429 polypeptide=Lus10006866 locus=Lus10006866.g ID=Lus10006866.BGIv1.0 annot-version=v1.0 ATGACCGATTTGATTTCACAGTTGCCTGATCATATCATCCATCATATCTTGTCTTTCTTGCGTTGCAAGAAGGATGTAGATCGAATCAGTGTCTTATCAA AAAGATGGAACGACATCCGGAGATCTTTCATGATATTGGATTTTGATCAGCGGCAGTTCCACAGTATGCCCATTAAAGAGGGTGAGAATAGAGAGGTGGA AATCAAGAGGAGGAACGAAATGTTCATGAACTACGTAAACAACACCCTGAAGAGTCACATCGACCAAGAAGGGTCGAGCATACTGAAGTTTGCTCTTCGG ATGACATCATTCGACCCAGAGGTGTCTACTGATGTCAAACAGTGGATAAGATCCGTTACTCAAAGCAACATCCAAGAGTTGGACCTCTGCTTCCCAAGCA AGAACAGGTTGTATACATTATCCCAGAACGTCTTCACGGTCAAGAAGATAACATCATTATGCGTTTCCGGCTGTAACTTGAAGAATTGCAAAGTCATTAA CCTTCCGAATCTTCGAAAGCTATCCCTCAAAAGACTCCATGTTGACGAGAAGATACTGCAAGGTCTCATCTCAAGTTGTCCTCTAATTGATGACTTGAGA CTGATACAATGCACTACCGGGTTTCAACGGTTGCTTCTTTCGAGCAACAAGCTCTCTAGAGTCGATCTGCATCTCTGTCGTAGGCTCCAGCAAGTCGAAC TCCAAACACCAAACCTCGAGAAGTTCTGGTATCATCATCAAAAGTTCGGGCAACGAGACAATTGCGAACTGGACTTGGCATCGTGCGGAGTCTTGAAAAG CTTAACGATTGAGGTCCCAAACATGACAGATGACAAGTTTCAGAATCTGGTCTCGAAGCTTCCGGTTATCAAGCAACTAAGCCTTACAAAATGCAACAAG CTGAATAGTATAACAGTGTCCAGTCACAGGCTCATGAAGCTAGTCTTGAGAGATTGCAAGAAGCTGAGAGAGGTCGATATGGACTGCCCGAATCTCACGT CGTTCGAGTACAAGGGCAAGGAGATGCCGTTTTTGTCCATGGACCCTTCCGGTTTGAAAGAAGCGAACTTGTATCTCGAGCGGGGGATTAAGAACCAGAC CAAAACCGGCTTCTGCTATGACGAGGACAACAAAGCTCGATTCGCTAAGCTGCAAGAGTTTCTGGAGAAGTTTGATCATTCCTTGGGTTTGAAGTTACTT GTCCGTTCCAAAAAGACTGTCATGGTACATGAAGACATGAGCAAGATCTTGCTTCCTCCAATGTACGATATCGAGCTCGAAGTCATTAGACCATCATTGG GTTTCGAAGATCTAGTAGATAACGTTCTTCGCAAGTGGCGTCCTTTGTCATTGTTCATTGTATCGCCTGCAATCACAGATCTTTCCGAGCGGCTGCACAA GAAGTTGGCGAACGAGAAGAAGAATCCAGTCTGCTGCAGCTACAACATCCCGAGCAACAAATGCTGGCGACACTTCTTGAAGAGCGCGAAGGCAATGGAC GTCATCGCTGGCAGTTCGAATCTTTCCGAGTGGTTTATATGGTTGAAGCAGAATTCCTCTGCGGTCGGCAATTTAACCGCCTTCTCGCTGACCTGGATAG CCCCCGAGAGGCCTACTGCAGCTGACCTGGAACACAACAGAGGAAGGAGCTCGAAGATCGTGCTGCAGGCGGGACCGTGGGGTGGGACCGGAGGGAGCAG TTGGGACGATGGAGCTCACCGTGGCGTCAAGGAGATCAAGCTCGTCTACGACCGTTGTGTAGATTCAATCAGGTTCGTATATGAGAAGAAGGGTGGGAAG ACCGTCGTCGGAGAGAGACATGGTGGCCTTGGTGGCACCAAGACAGCTGAGATTAAACTGCAATACCCTGATGAGTATTTGACCCAAATACACGGATACT ACCACCCGGTCGTCCATGGCGGCCACCCAGTGATCCGGTCACTAACGTTCATGACCAACAAGAGGAGATTCGGGCCTTTCGGTGTTGAAGAAGGCACTCC CTTTACACAGGACTTGGCTGGAGTTTCTGTGGTGGGATTCAATGGCAGAGGTGGCTGGTACTTGGACTCCATTGGTGTTCACTATGTTGAAGGCAACAAG TCCAAGACCATCTTCACAAAGCTTCAGCAGAAGCTTCAGAGGATCTCGTCGGTCGCGAGACCTTCCAGGGATGCTAGAACAGCCTATTAG
AA sequence Show only first row Show all	>Lus10006866 pacid=23144429 polypeptide=Lus10006866 locus=Lus10006866.g ID=Lus10006866.BGIv1.0 annot-version=v1.0 MTDLISQLPDHIIHHILSFLRCKKDVDRISVLSKRWNDIRRSFMILDFDQRQFHSMPIKEGENREVEIKRRNEMFMNYVNNTLKSHIDQEGSSILKFALR MTSFDPEVSTDVKQWIRSVTQSNIQELDLCFPSKNRLYTLSQNVFTVKKITSLCVSGCNLKNCKVINLPNLRKLSLKRLHVDEKILQGLISSCPLIDDLR LIQCTTGFQRLLLSSNKLSRVDLHLCRRLQQVELQTPNLEKFWYHHQKFGQRDNCELDLASCGVLKSLTIEVPNMTDDKFQNLVSKLPVIKQLSLTKCNK LNSITVSSHRLMKLVLRDCKKLREVDMDCPNLTSFEYKGKEMPFLSMDPSGLKEANLYLERGIKNQTKTGFCYDEDNKARFAKLQEFLEKFDHSLGLKLL VRSKKTVMVHEDMSKILLPPMYDIELEVIRPSLGFEDLVDNVLRKWRPLSLFIVSPAITDLSERLHKKLANEKKNPVCCSYNIPSNKCWRHFLKSAKAMD VIAGSSNLSEWFIWLKQNSSAVGNLTAFSLTWIAPERPTAADLEHNRGRSSKIVLQAGPWGGTGGSSWDDGAHRGVKEIKLVYDRCVDSIRFVYEKKGGK TVVGERHGGLGGTKTAEIKLQYPDEYLTQIHGYYHPVVHGGHPVIRSLTFMTNKRRFGPFGVEEGTPFTQDLAGVSVVGFNGRGGWYLDSIGVHYVEGNK SKTIFTKLQQKLQRISSVARPSRDARTAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73040			Mannose-binding lectin superfa...		Lus10006866 [exp]	0	1
					Lus10032581 [exp]	6.2	0.7620
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10000498 [exp]	7.1	0.6628
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	15.6	0.6900
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	21.8	0.6822
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010645 [exp]	37.3	0.7114
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	38.7	0.6862
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	44.5	0.6987
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10005274 [exp]	47.0	0.6959
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10005634 [exp]	49.6	0.6667
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10041727 [exp]	51.8	0.6455

Compare expression of checked genes

Lus10006866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.