Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19730 218 / 3e-74 Ribosomal L28e protein family (.1.2.3) AT4G29410 218 / 4e-74 Ribosomal L28e protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037609 [exp] 301 / 1e-106 AT2G19730 221 / 2e-75 Ribosomal L28e protein family (.1.2.3) Lus10012914 [exp] 228 / 7e-78 AT4G29410 224 / 7e-77 Ribosomal L28e protein family (.1.2) Lus10012915 [exp] 227 / 2e-77 AT4G29410 224 / 1e-76 Ribosomal L28e protein family (.1.2) Lus10032699 [exp] 219 / 2e-74 AT4G29410 219 / 1e-74 Ribosomal L28e protein family (.1.2) Lus10032698 [exp] 108 / 2e-30 ND 134 / 1e-40
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045500 [exp] 239 / 2e-82 AT2G19730 230 / 3e-79 Ribosomal L28e protein family (.1.2.3) Potri.001G194000 [exp] 223 / 3e-76 AT2G19730 227 / 1e-77 Ribosomal L28e protein family (.1.2.3) Potri.006G212501 [exp] 42 / 9e-06 AT4G29410 45 / 2e-07 Ribosomal L28e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [flax] [poplar] Ribosomal_L28e Ribosomal L28e protein family
Representative CDS sequence Show only first row Show all	>Lus10006869 pacid=23144388 polypeptide=Lus10006869 locus=Lus10006869.g ID=Lus10006869.BGIv1.0 annot-version=v1.0 ATGGCTACAGTATCTGAGCAGCTCATTTGGGAGGTAGTGAAGAGAAACAATTCGTTTCTCGTGAAGCAGTTCGGAAGAGGAACTGCTGGCATCGTCTTCA GCAAAGAGAGCAACAATCTGTACAATCTCAACTCGTACAAGCACTCCGGGTTGGCAAATAAGAAGACGGTGACGATTCAGCCAGCAGAGAAGGAACAAGC TGTGGTACTTGCTACAACTAAGACAAAGAAGCAGAACAAACCATCTGCATTGGTTCACAGGTCTGTCATGAAGAAGGAGTTCTATCGCATGGCTAAGGCT GTGTTGAACCAGGTGGGCGATAACTTCTACAGGCCAGACCTGAAGAAAGCCGCACTAGCAAGGCTAAGTGCTGTGAACAGAGGCCTCAAGGTTTCAAAGT CTGGAATCAAGAAGAGGACCAGACAAGCCACCAAGATCCATGGGAGGAAGTGA
AA sequence Show only first row Show all	>Lus10006869 pacid=23144388 polypeptide=Lus10006869 locus=Lus10006869.g ID=Lus10006869.BGIv1.0 annot-version=v1.0 MATVSEQLIWEVVKRNNSFLVKQFGRGTAGIVFSKESNNLYNLNSYKHSGLANKKTVTIQPAEKEQAVVLATTKTKKQNKPSALVHRSVMKKEFYRMAKA VLNQVGDNFYRPDLKKAALARLSAVNRGLKVSKSGIKKRTRQATKIHGRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	0	1
AT2G19730			Ribosomal L28e protein family ...		Lus10037609 [exp]	2.0	0.9028
AT3G10950			Zinc-binding ribosomal protein...		Lus10006414 [exp]	2.4	0.8722
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	4.9	0.8350
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	5.3	0.8385
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	6.0	0.8647
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	7.2	0.8268
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10010993 [exp]	9.2	0.8296
AT2G28740		HIS4	histone H4 (.1)		Lus10005448 [exp]	9.4	0.7305
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	10.1	0.8188
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	10.4	0.8451

Compare expression of checked genes

Lus10006869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.