Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21280 653 / 0 UBP7 ubiquitin-specific protease 7 (.1) AT1G51710 652 / 0 ATUBP6, UBP6 ubiquitin-specific protease 6 (.1.2) AT1G04860 53 / 6e-07 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT5G06600 52 / 9e-07 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT4G10570 52 / 9e-07 UBP9 ubiquitin-specific protease 9 (.1) AT3G11910 52 / 1e-06 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT2G32780 52 / 2e-06 ATUBP1 ubiquitin-specific protease 1 (.1) AT4G10590 51 / 3e-06 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 51 / 3e-06 UBP11 ubiquitin-specific protease 11 (.1) AT2G40930 50 / 4e-06 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037610 [exp] 595 / 0 AT1G51710 522 / 0.0 ubiquitin-specific protease 6 (.1.2) Lus10032623 [exp] 92 / 9e-19 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 84 / 1e-16 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 73 / 5e-13 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10021253 [exp] 57 / 6e-08 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 54 / 4e-07 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10029686 [exp] 54 / 4e-07 AT3G49600 1255 / 0.0 ubiquitin-specific protease 26 (.1) Lus10042726 [exp] 54 / 5e-07 AT3G49600 1296 / 0.0 ubiquitin-specific protease 26 (.1) Lus10038994 [exp] 54 / 5e-07 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197400 [exp] 711 / 0 AT3G21280 727 / 0.0 ubiquitin-specific protease 7 (.1) Potri.003G033700 [exp] 709 / 0 AT3G21280 716 / 0.0 ubiquitin-specific protease 7 (.1) Potri.003G092400 [exp] 67 / 4e-11 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G142000 [exp] 61 / 2e-09 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1) Potri.005G179500 [exp] 56 / 1e-07 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.002G081600 [exp] 53 / 8e-07 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.006G270600 [exp] 52 / 1e-06 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.008G012600 [exp] 52 / 1e-06 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.007G093600 [exp] 51 / 1e-06 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.003G202800 [exp] 52 / 2e-06 AT4G30890 577 / 0.0 ubiquitin-specific protease 24 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10006870 pacid=23144427 polypeptide=Lus10006870 locus=Lus10006870.g ID=Lus10006870.BGIv1.0 annot-version=v1.0 ATGCTTACAGTGAGCGTTAAATGGCAGAAGGAGATGTTTCAAAAGGTTGAGATTGATACAACGCAGCCTCCTTATGTCTTCAAATGTCAGTTGTTTGATT TGACTGGCGTGCCTCCCGAGAGACAGAAGATTATGGTAAAGGGTGCTTTGTTGCAGGATGATGGAGATTGGGCAACAATTGGTGTAAAGCAGGGTCAAAG GTTGATGATGATGGGAACTGCTGATGAGATCGTGAACGCTCCAGAGAAAGGCCCTGTTTTTGTTGAAGATCTTCCAGAAGAAGAACAAGTTGCTGCTGTG GGTCATACTGCTGGTTTGCTTAACCTAGGGAATACCTGCTACATGAATTCCACCGTACAATGCCTGCATTCAGTTCCAGAATTGAAGTCTGCTTTACTCA AATATCCATCTGAAAGGAAAAACGAGGTGGATCAAACATCTCATATGCTCACTGCTGCAACTAGGGAATTATTCAATGAACTTGATAAGAGTGTGAAGGC TGTTGCACCTATGCAATTCTGGATGGTATTGCGCAAAAAGTACCCACAGTTTGGTCAAATGCACAATGGCTATTACATGCAACATTCCCCTCAGTTTGGT CAAATGCACAATGGCTATTACATGCAACAGGATGCTGAAGAATGTTGGACTCAGCTTCTTTATACACTTTCACAGTCTATCCGAGGACCAAGCAGTAGCA GTGAAAATGTCGATGCACTGAAGGAGATTTTTGGTGTTGAGCTTGTAAGCAGGGTTCATTGCCAGGAAAGTGGTGAAGAAAGTCCAGAGACAGAATCTGT CTATTCACTAAAATGCCACATATCACAAGAGGTGAACCACATGCATGAAGGATTGAAACATGGTTTGAAATCGGAATTGGAGAAGGCCTCTCCAGCTTTG GGGCGCAGTGCTATTTTCTTGAAAGAGTCTCGTATTAATGCCTTACCGCGGTACTTAACCGTCCAATTTGTTCGCTTCTTCTGGAAGAGGGAGTCAAACC AGAAAGCCAAGATTTTGAGGAAAGTGGATTATCCTTTGGTGTTGGATATCTTTGATCTCTGTTCAGACGATCTCCGCAAACAATTGGAAGCACCACGCAA GCTGTTGAGAGAGGAAGAAGGTAAGAAAGCTGGTTTGAAGGGCAAGGAGAAGACTGACTCGAAAGACACCGATGTGAAGATGAATGATGCAGAGGGATCA TCTGGCGGTGAATCATCGAAAGCTCCATCAGACAAAACCGAACAGCTTACTGGAATATATGATTTGGTTGCCGTCCTCACTCACAAGGGAAGAAGTGCTG ATTCAGGGCATTACGTTGCCTGGGTGAAGCAAGAGAACGGCAACTGGATCGAGTTTGATGATGATAGTCCCATCCCACAGCGGGAAGAAGATATCGTTAA GCTATCCGGAGGAGGTAATCAATCAAAAGTCTCCGTCTTTGTCTATCTGTTTGAGTCAACTCACGAGCCTATCATTTCGAACATGCCATGTCTCAAACGA GTTATCGAATCGAACATTACAAGAACTGTCACCCCTGTCTCCCTTGTTGAGGTTGAGAAAGGGGGCAAATCATTTCTGCAGATTGCATATGCATCATCTG TTGTCCTCTTACCGTCACGTGGTCGTCAGCTGTTGAGAGAGGAAGAAGGTAAGAAAGCTGGTTTGAAGGGCAAGGAGAAGACTGACTCGAAAGACACCGA TGTGAAGATGAATGATGCAGAGGGATCATCTGGCGGTGAATCATCGAAAGCTCCATCAGACAAAACCGAACAGCTTACTGGAATATATGATTTGGTTGCC GTCCTCACTCACAAGGGAAGAAGTGCTGATTCAGGGCATTACGTTGCCTGGGTGAAGCAAGAGAACGGCAACTGGATCGAGTTTGATGATGATAGTCCCA TCCCACAGCGGGAAGAAGATATCGTTAAGCTATCCGGAGGAGGTGATTGGCATATGGCATACATTTGCATGTACAAGGCTCGCACCATACCGATGTAA
AA sequence Show only first row Show all	>Lus10006870 pacid=23144427 polypeptide=Lus10006870 locus=Lus10006870.g ID=Lus10006870.BGIv1.0 annot-version=v1.0 MLTVSVKWQKEMFQKVEIDTTQPPYVFKCQLFDLTGVPPERQKIMVKGALLQDDGDWATIGVKQGQRLMMMGTADEIVNAPEKGPVFVEDLPEEEQVAAV GHTAGLLNLGNTCYMNSTVQCLHSVPELKSALLKYPSERKNEVDQTSHMLTAATRELFNELDKSVKAVAPMQFWMVLRKKYPQFGQMHNGYYMQHSPQFG QMHNGYYMQQDAEECWTQLLYTLSQSIRGPSSSSENVDALKEIFGVELVSRVHCQESGEESPETESVYSLKCHISQEVNHMHEGLKHGLKSELEKASPAL GRSAIFLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSDDLRKQLEAPRKLLREEEGKKAGLKGKEKTDSKDTDVKMNDAEGS SGGESSKAPSDKTEQLTGIYDLVAVLTHKGRSADSGHYVAWVKQENGNWIEFDDDSPIPQREEDIVKLSGGGNQSKVSVFVYLFESTHEPIISNMPCLKR VIESNITRTVTPVSLVEVEKGGKSFLQIAYASSVVLLPSRGRQLLREEEGKKAGLKGKEKTDSKDTDVKMNDAEGSSGGESSKAPSDKTEQLTGIYDLVA VLTHKGRSADSGHYVAWVKQENGNWIEFDDDSPIPQREEDIVKLSGGGDWHMAYICMYKARTIPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10006870 [exp]	0	1
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10037610 [exp]	2.8	0.8030
AT2G16880			Pentatricopeptide repeat (PPR)...		Lus10041421 [exp]	2.8	0.8196
AT4G24820			26S proteasome, regulatory sub...		Lus10014789 [exp]	3.5	0.7695
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	7.7	0.7632
AT1G04230			Protein of unknown function (D...		Lus10039489 [exp]	9.8	0.7540
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	9.9	0.7398
AT2G26770		SCAB1	stomatal closure-related actin...		Lus10026809 [exp]	15.2	0.7454
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	21.2	0.7383
AT4G24550			Clathrin adaptor complexes med...		Lus10024548 [exp]	26.8	0.7291
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	28.0	0.7559

Compare expression of checked genes

Lus10006870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.