Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21290 283 / 2e-79 dentin sialophosphoprotein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037611 [exp] 1731 / 0 AT3G21290 544 / 5e-174 dentin sialophosphoprotein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G033100 [exp] 384 / 3e-114 AT3G21290 317 / 7e-90 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006871 pacid=23144395 polypeptide=Lus10006871 locus=Lus10006871.g ID=Lus10006871.BGIv1.0 annot-version=v1.0 ATGTTCGGTGGCTCTTCCAAGCTCGGTGGCGGTGGCCGCGGCGGCGCCGGAAGGGGAGGAGGTCCCGGCGCCAAACGTCGCCAGTCCATACCCTCCTCGT TCTCCCACCCTCCTCCTCCTCCTATTCTCCGCCCGCCCACCGCTCCCCGCCTCTCCCTCGGCGCCAACCCTCGAAACAATCGCTCTGGCGGCGGCGGAGG TCCGGACAACAGTAAGAATGCCACCTCTGTTGAAGAGAGTTTCGCCCTCATCCCTGGGAATTCCCTTCCCGCGTTTGCTATGATTATTAGGCTGGTTCCT GACTTGGTGGATGAGATCAAGAGGGTCGAAGCTCAGGGCGATACTGCTAGGATTAAGTTCGATTCCATGGCTAACAATCCTAATGGAAACGTTATTGATG TCGGTGGCAAGGAGTTTAGATTTACATGGTCAAAGGAAGTTGGGGACCTTTGCGACATATATGAACAACGTGAAAGTGGAGAAGACGGAGATGGTTTACT TGTTGAATCAGGATTTGCTTGGCGCAAGGTAAATGTCCAACGTATCTTGGATGAATCTACTAAAAACCATGTTAAGATGAGGTCAGAAGAAGCTGAACGC AAGCATAAATCACGCAAAGCAATAGTGCTAGATCACTCAAATCCATCTATGAAGGGTCATATGAAGCAACGTGCAGCTGCAGAAGCTAATCCATGGAGAA CAGGTTTTAAGCAAAAGAAAGAGCCCCCTTTCAAAAAGCAGAAGTCGGAATCACCACAAGTTGGAGGTCCACCTAAGTCATTTAAGATTGGAATTACTTC TGGTGTTAACCCAAGAGGTAGACCTCCATCCTCACCTCTGCCATCTACACCTGAGCAATTCAGTATTCTAGCATCTCCACTGGGAATTGGAAGTTCCACT AAGATTCACACAAGCACTGAAGAAATTATACCTAACCAGTTTAAAGAGAAACAAAATTCTGGCCCGGAGAAAGGAATCTTTTCTGGGAGTGGCGATGCCA GAAAGGAGGCTGCTGAAGGCAAAGGCTATTCTGTGGCCAAGTCAGCGGACATAGAAAGAATGCTGATTTCTTTGCTGGCGGAGAATAAGACTAATGGGAT GACCATTAAAGCCTTGGAGAAAGCTATTGGAGATTCAGTTCCAGGAACTTCCAAAGAGATTGAGCCAATCCTGAAAAAGATTGCAATCTGTCAAGCTTCA GGACGATATTTCTTGAAAGCAGACATGGAAAATGTGAAGAAACCTTCATTTGGTAGTGGAAGCTCTTCGGAAGACAATGGAGGACAGACGCTTGCATCAG AAGACAACCATGAGAAAAGGCCTACTCCGGAACATGCCCTGCTGGACCCTAGAATGGATGGGGAAACAAATGAAATGGAAAAAGATATTTCAAGACCATC GCCTGATCTGTTTGGCGAAACAAAGGACTCTGACAAGAGTGAAGGGCGGGCGGGCAGCTCTAGCGATAGTAGTGGCAGTGGAAGCGACAGCAGTGATAGC GGTAGCAGTAGGAGTAAAAGTCAAACTCCGACAGGAGGTGGAAGTGGAAGCAGTAGTGACAGTGAAAGTGACAGTGATGCTTCATCCAGTGGTAAAGAGG GATCTGATGAAGATGTGGACATAATGACAAGCGATGACAGAGAACTTCAGGTAGAAAAGTTTCAAGCCTCTGAACCTGGATTTTCTTCGTCTCCTGATCC GTGGAGATCTTTACACAATGGTGAAGAGAAGCAAGACGGTGAGGGATCTGGTGCAGTTGACATTGAGGGAGATGGATCTGATGCTATTGACATTGACGGT AATGAATCTGATGAAGGAAAGGTACTTGTTTCCGCGAAAGATAATTTGCTTCATGGTGAAGAAGGTGAAATGTTTAGGGAAGACGTCGCTCCCATGCTAG CTGACCATGAAATTTTGCAAGATCGTGAAGCTTTCATTGGAACTTTGTTCGAGGACGGTGAAAACATAATGAAGGATGGAAATGGACAAGAACACTCTGA TAGTTCTGAGAGGACATCTAAGGGTAAATCCAAGAAGGGGCCAGATAGGAAGCCCTTGGATGAGAAACCCGAACGCCGGAAAAGACAGAAGTCAGACAAC CTTACTCAAGCAACCAATTCTGGAAGTTGGGATGCTCATGAAATTGAAGGAGCGCGTAAGAACAGGGGAGGTGGCACAGAATTTGATCCACTAAAATGTC AGAATGAGACAAATTCTGGGAAAACTGGGTCGGAAGCAGCTGGGAAATCAGCAGGGCACACTCGCAAACCCGGAGATAAAAGTTCTCTGGTGCAAGAAAC TTTTCCTGTCCAACAAAGGGAAAAGCCTTTGAGAGGCGGTGAACATGAGAATAATCTGCCAAAAGAGAAAAAAGTGCCGAAACGTCCAAAGCAGTCCAAA GATGCTCTGCAGGCTGAAATATCTTCACCGAGAGATGTCAACATAGGTGTCAGTGGGAAGCACACAGCTGGTGGTAGCAAAAGTCTCCAAAGAGAGCCTT CAGACCTGGAGTTGGGGGAACTTCGTGAGCCACTGCTTGAAGAAACACCAACTGACAAGCGGTTTGAGAGGAAAGGTTCTTTTAAAAAGATTAATAGTAG ACTAAGTACTTCAGATAGTCATGATAAAGATTTGAGCAAGGGAAGACCTGTTGGAAAGATAGCTTTAGAGTTGGGAGGACGGCCTTCTCCATGCAACCAA ACGACCGGGGTCATCAGGAGAAACCAGGATCAACTTTCTGAAGATACCGCGAAACCTTTACAAAAGTTCGGATCACCTCAGTTCAACAAATTGGCTGCTG GAGCGAAAGTAGCAAATGGCATAGAAGGGTATGGAGAAAACCAGAAGAAACCCCCCACTGTTCATGATGTAAAGCGTGGACAACCGGCCAACTCGATAAA GGAAATCAAAGCTCGGAAGTCCAATAATACAATAGCTGATTTTCGTAAGGACAACAATGGTGCCGCTCAATCGGAGGAAGACAGCTCTTCTTTCTATAAG TATGAGAAGGACGTACCGGAGTTAGAGGGACCGATTAGAGACTTCACTCAGTACGAGGAGTATGTTCAGGAATATCGCGACAAATACGAGAGCTATTGTG CATTGAACAAGATCCTGGACAGCTACAGGAAGCAGTTCCTTAAACTTGGAAAGGACCTTGAATTAGCTAAAGGGCGGGATATGGACAGATACCAAACAAT TGTGGTGCAGCTGAAGGAAACTTTTCGTCAGTGCGAAGCGGTATAA
AA sequence Show only first row Show all	>Lus10006871 pacid=23144395 polypeptide=Lus10006871 locus=Lus10006871.g ID=Lus10006871.BGIv1.0 annot-version=v1.0 MFGGSSKLGGGGRGGAGRGGGPGAKRRQSIPSSFSHPPPPPILRPPTAPRLSLGANPRNNRSGGGGGPDNSKNATSVEESFALIPGNSLPAFAMIIRLVP DLVDEIKRVEAQGDTARIKFDSMANNPNGNVIDVGGKEFRFTWSKEVGDLCDIYEQRESGEDGDGLLVESGFAWRKVNVQRILDESTKNHVKMRSEEAER KHKSRKAIVLDHSNPSMKGHMKQRAAAEANPWRTGFKQKKEPPFKKQKSESPQVGGPPKSFKIGITSGVNPRGRPPSSPLPSTPEQFSILASPLGIGSST KIHTSTEEIIPNQFKEKQNSGPEKGIFSGSGDARKEAAEGKGYSVAKSADIERMLISLLAENKTNGMTIKALEKAIGDSVPGTSKEIEPILKKIAICQAS GRYFLKADMENVKKPSFGSGSSSEDNGGQTLASEDNHEKRPTPEHALLDPRMDGETNEMEKDISRPSPDLFGETKDSDKSEGRAGSSSDSSGSGSDSSDS GSSRSKSQTPTGGGSGSSSDSESDSDASSSGKEGSDEDVDIMTSDDRELQVEKFQASEPGFSSSPDPWRSLHNGEEKQDGEGSGAVDIEGDGSDAIDIDG NESDEGKVLVSAKDNLLHGEEGEMFREDVAPMLADHEILQDREAFIGTLFEDGENIMKDGNGQEHSDSSERTSKGKSKKGPDRKPLDEKPERRKRQKSDN LTQATNSGSWDAHEIEGARKNRGGGTEFDPLKCQNETNSGKTGSEAAGKSAGHTRKPGDKSSLVQETFPVQQREKPLRGGEHENNLPKEKKVPKRPKQSK DALQAEISSPRDVNIGVSGKHTAGGSKSLQREPSDLELGELREPLLEETPTDKRFERKGSFKKINSRLSTSDSHDKDLSKGRPVGKIALELGGRPSPCNQ TTGVIRRNQDQLSEDTAKPLQKFGSPQFNKLAAGAKVANGIEGYGENQKKPPTVHDVKRGQPANSIKEIKARKSNNTIADFRKDNNGAAQSEEDSSSFYK YEKDVPELEGPIRDFTQYEEYVQEYRDKYESYCALNKILDSYRKQFLKLGKDLELAKGRDMDRYQTIVVQLKETFRQCEAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	0	1
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	1.0	0.9201
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	2.4	0.8539
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Lus10017464 [exp]	3.0	0.8034
AT2G47210	MYB		myb-like transcription factor ...		Lus10003470 [exp]	3.9	0.7836
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	4.0	0.8148
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	4.6	0.8297
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	5.9	0.8067
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	6.9	0.8042
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	7.3	0.8086
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	8.9	0.7660

Compare expression of checked genes

Lus10006871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.