Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51720 1006 / 0 Amino acid dehydrogenase family protein (.1) AT5G07440 132 / 3e-33 GDH2 glutamate dehydrogenase 2 (.1.2.3) AT3G03910 130 / 8e-33 GDH3 glutamate dehydrogenase 3 (.1) AT5G18170 127 / 1e-31 GDH1 glutamate dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037612 [exp] 1155 / 0 AT1G51720 947 / 0.0 Amino acid dehydrogenase family protein (.1) Lus10032509 [exp] 132 / 5e-32 AT5G07440 771 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Lus10003858 [exp] 123 / 4e-30 AT5G18170 782 / 0.0 glutamate dehydrogenase 1 (.1) Lus10005697 [exp] 122 / 6e-30 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10020288 [exp] 121 / 2e-29 AT5G18170 780 / 0.0 glutamate dehydrogenase 1 (.1) Lus10043007 [exp] 117 / 2e-28 AT5G07440 649 / 0.0 glutamate dehydrogenase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199600 [exp] 1070 / 0 AT1G51720 1033 / 0.0 Amino acid dehydrogenase family protein (.1) Potri.001G193600 [exp] 371 / 4e-126 AT1G51720 303 / 7e-100 Amino acid dehydrogenase family protein (.1) Potri.012G113500 [exp] 137 / 7e-35 AT5G07440 766 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.015G111000 [exp] 136 / 8e-35 AT5G07440 773 / 0.0 glutamate dehydrogenase 2 (.1.2.3) Potri.013G058300 [exp] 122 / 1e-29 AT5G18170 787 / 0.0 glutamate dehydrogenase 1 (.1) Potri.019G034800 [exp] 121 / 1e-29 AT5G18170 783 / 0.0 glutamate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF02812 [flax] [poplar] ELFV_dehydrog_N Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CL0063 [flax] [poplar] NADP_Rossmann PF00208 [flax] [poplar] ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10006872 pacid=23144437 polypeptide=Lus10006872 locus=Lus10006872.g ID=Lus10006872.BGIv1.0 annot-version=v1.0 ATGGATGACATGAACTTGATTCAGCAAGCACAAAGGCATCACTTGGTGGTAAGGGAACTAGGAGAAGGTATTGATTTGGAAATAGGTCATGGAGATGATG ATCCTTCTTCATTTGCTAATACCCCTCCGTTAGTTGGAGGGGAGGATCCCGGGGAGCCTAATAAGAACATGACGCCGATGGATTCTTCTCAGCTCTCCAC GGACGATCACGATCAAGAAGTGTTGAAGTCGGCAAAACGTAAGAAGAAAGTTGTGAAGAGATGGAGAGACGAGTGGGCCGATACGTACAAATGGGCGTAT GTTGATGTGAAAGAAGGCACTGCGAGGATATTCTGTTCAGTTTGTAGAGAGTACGGTAGGAAGCACAGAAGGAATCCTTATGGTAATGAAGGTAGTAGGA ACATGCAAATGAGTGCCTTGGAAGAACATAACAATAGTTTGCTTCATAAAGAGGCACTTCGTCTGCAAATGGCTTCCAAGGATAAGATTGTTGTTGATAA ACCTATTCATGTCAAAGCACTTATGTCGAAAACAGCCGGGTCGATTATTGAAGCTGCGCTGAAACGTGACCCTAACGAGGTTGAGTTTATACAGTCGGTG CAAGAAGTCGTCCATGCTTTAGATAGGGTGATTGCCAAGAATGCACATTATGTCAATGTCATGGAGCGCTTGATAGAGCCTGAAAGAATGATACTTTTCC GAGTTCCTTGGGTGGATGATAGGGGCGAGACACATGTCAATCGGGGTTTTAGGGTACAATTTAACCAGGCATTGGGTCCATGTAGAGGCGGTATGCGTTT TAGTCCATCAATGAACCTAAGCATTGCCAAATTTCTTGGTTTTGAGCAGACATTTAAGAACGCTTTATCACCTTACAAATTAGGAGGGGCGGCTGGCGGA AGTGACTTTGACCCTAAAGGAAAAAGTGATAATGAAGTAGTTATGCGCTTTTGTCAAAGCTTTATGAATGAGATGTATAGATATCTTGGGCCTGAGAAGG ATCTCCCTTCGGAGGAAATGGGTGTTGGAACTCGGGAGATGGGATATCTCTTTGGACAGTACAGACGTTTAGCTGGTCATTTTCAGGGAAGTTTTTCAGG GCCAAGAATATTCTGGTCCGGTTCTAGTCTTCGAACTGAAGCAACTGGTTATGGACTGGTTTTCTTTGCCCAACTTATGCTTGCTGACATGAACAAAGAA CTGAAAGGACTAAGGTGTGCTATAAGTGGCTCTGGCAAGATTGCTATGCATGTTCTGGAGAAGCTTATTGCTTATGGAGCTCATCCAATCACTGTATCAG ACTCCAAAGGATATCTGGTCGACGAGGATGGGTTTGATTACATGAAGATATCGTTTTTGAGAGATATCAAAGCCCAGCAAAGAAGTTTGAGGGATTACTC GAAAACATATGCTCGATCAAAATACTACGACGATGCAAAACCTTGGAGCGAGAGATGCGATGTTGCGTTCCCTTGTGCTTTCCAGAATGAAATTGATCAA TCCGACGCCATTAATCTTGTCAACTCTGGTTGCCGGATACTAGTAGAAGGCTCAAACATGCCATGTACGTCTGAAGCGATTGAAGTTTTGAGAAAAGCCA ATGTCCTCGTTGCTCCTGCTAAGGCTGCTGGGGCCGGAGGGGTTGTTGCCGGGGAGCTGGAACTGAACCACGAGTGCAGTTCGATGAACTGGTCACCTGA AGACTTTGAATCTAAGTTGCAGGAAGCTATGAAACAGATATACCAAAGAGCTCTTAAAGCAGCGAATGATTTCGGTTACCAGAAAGAAAGCCCCGAGGCC TTGGTTCATGGGTCTGTTATTTCATCTTTCCTGGCTATTGCTCAAGCCATGACTGATCAAGGTTGTGTTTAG
AA sequence Show only first row Show all	>Lus10006872 pacid=23144437 polypeptide=Lus10006872 locus=Lus10006872.g ID=Lus10006872.BGIv1.0 annot-version=v1.0 MDDMNLIQQAQRHHLVVRELGEGIDLEIGHGDDDPSSFANTPPLVGGEDPGEPNKNMTPMDSSQLSTDDHDQEVLKSAKRKKKVVKRWRDEWADTYKWAY VDVKEGTARIFCSVCREYGRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIVVDKPIHVKALMSKTAGSIIEAALKRDPNEVEFIQSV QEVVHALDRVIAKNAHYVNVMERLIEPERMILFRVPWVDDRGETHVNRGFRVQFNQALGPCRGGMRFSPSMNLSIAKFLGFEQTFKNALSPYKLGGAAGG SDFDPKGKSDNEVVMRFCQSFMNEMYRYLGPEKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFSGPRIFWSGSSLRTEATGYGLVFFAQLMLADMNKE LKGLRCAISGSGKIAMHVLEKLIAYGAHPITVSDSKGYLVDEDGFDYMKISFLRDIKAQQRSLRDYSKTYARSKYYDDAKPWSERCDVAFPCAFQNEIDQ SDAINLVNSGCRILVEGSNMPCTSEAIEVLRKANVLVAPAKAAGAGGVVAGELELNHECSSMNWSPEDFESKLQEAMKQIYQRALKAANDFGYQKESPEA LVHGSVISSFLAIAQAMTDQGCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51720			Amino acid dehydrogenase famil...		Lus10006872 [exp]	0	1
AT1G51720			Amino acid dehydrogenase famil...		Lus10037612 [exp]	1.4	0.8835
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10037222 [exp]	2.4	0.8601
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10020104 [exp]	2.4	0.8655
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	4.6	0.8593
AT3G03890			FMN binding (.1.2)		Lus10010649 [exp]	10.5	0.8197
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035511 [exp]	12.4	0.8877
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	19.0	0.8473
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	26.8	0.7824
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	34.4	0.8615
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	35.9	0.7980

Compare expression of checked genes

Lus10006872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.