Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51730 276 / 6e-94 Ubiquitin-conjugating enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037613 [exp] 340 / 3e-119 AT1G51730 313 / 1e-108 Ubiquitin-conjugating enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G199500 [exp] 300 / 2e-103 AT1G51730 294 / 7e-101 Ubiquitin-conjugating enzyme family protein (.1) Potri.001G193700 [exp] 284 / 7e-97 AT1G51730 303 / 1e-104 Ubiquitin-conjugating enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF05773 [flax] [poplar] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Lus10006873 pacid=23144415 polypeptide=Lus10006873 locus=Lus10006873.g ID=Lus10006873.BGIv1.0 annot-version=v1.0 ATGACTGACTATGAACAAGAGCAGGAGATGGAAATTGAAGCACTGGAAGCTATACTCATGGATGAGTTCAAAGAAATCCGTTCCAGTGAGAGTGGCTTGA ATACTTCAGCTCGGTGTTTCCAGATAACGATATCTCCACAGGATGATGATATAGACCAGTCAACAACGACACCAGTTCAGCTAGGCTTAATATTCGCCCA CACAGAGAAGTATCCAGATGAGCCTCCACTATTACATGTGACAAGTATAAAAGGTGTGCAACCAAGTGATCTTAAGACGTTGAAGGAGAAGCTTGAACAA GAGGCATCTGAAAATCTTGGAATGGCAATGGTCTACACACTGGTTACATCAGCTAAAGAGTGGCTATCTGACTTATGTGGTCAAGACGATGAGGACGATG ATGCTGCGGATTTGGAGGCGACCAAGGACGATGTGATTATACCACATGGAGAACCTGTTACCGTCGAGACTTTTCTAGCATGGAGAGAGAAATTCGAAGC AGAGCTGGCACTTGAGCGAGCAAAGTTGATGCCTGAGTTCGCACTCACCGTAACAAAGGAGAAGAAGCTTACCGGAAGACAGTGGTTCGAGAGTGGAAAA GGGAGAGGTGCAGCAGCAGCAGCCACTGAAGGCTCAGAGGAGGAGGACGAAGACGATATTGATTTTGATGACGAGGATTTTGATGACGACGAAGACATGT TGGAGCACTACCTTGCTGAGAAATCTGACTCGTCATCTCATCATTCCTCTATGAGAGCTGGTTAG
AA sequence Show only first row Show all	>Lus10006873 pacid=23144415 polypeptide=Lus10006873 locus=Lus10006873.g ID=Lus10006873.BGIv1.0 annot-version=v1.0 MTDYEQEQEMEIEALEAILMDEFKEIRSSESGLNTSARCFQITISPQDDDIDQSTTTPVQLGLIFAHTEKYPDEPPLLHVTSIKGVQPSDLKTLKEKLEQ EASENLGMAMVYTLVTSAKEWLSDLCGQDDEDDDAADLEATKDDVIIPHGEPVTVETFLAWREKFEAELALERAKLMPEFALTVTKEKKLTGRQWFESGK GRGAAAAATEGSEEEDEDDIDFDDEDFDDDEDMLEHYLAEKSDSSSHHSSMRAG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	0	1
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	1.0	0.8855
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	2.0	0.8630
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	3.5	0.8605
AT1G05785			Got1/Sft2-like vescicle transp...		Lus10019570 [exp]	4.9	0.8149
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	5.7	0.8499
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	7.1	0.8419
AT1G27461			unknown protein		Lus10007752 [exp]	7.6	0.7683
AT1G07840			Sas10/Utp3/C1D family (.1.2.3)		Lus10029397 [exp]	7.7	0.8323
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030598 [exp]	8.8	0.7787
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10017011 [exp]	10.2	0.8294

Compare expression of checked genes

Lus10006873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.