Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51745 315 / 8e-99 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G21295 301 / 8e-93 Tudor/PWWP/MBT superfamily protein (.1) AT3G03140 157 / 7e-40 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037614 [exp] 1215 / 0 AT3G21295 370 / 3e-119 Tudor/PWWP/MBT superfamily protein (.1) Lus10013363 [exp] 153 / 7e-39 AT3G03140 322 / 1e-99 Tudor/PWWP/MBT superfamily protein (.1) Lus10004108 [exp] 151 / 4e-38 AT3G03140 311 / 3e-95 Tudor/PWWP/MBT superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G045600 [exp] 586 / 0 AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.001G193900 [exp] 580 / 0 AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.019G048100 [exp] 153 / 1e-38 AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G081400 [exp] 150 / 8e-38 AT3G03140 202 / 5e-55 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006874 pacid=23144389 polypeptide=Lus10006874 locus=Lus10006874.g ID=Lus10006874.BGIv1.0 annot-version=v1.0 ATGGGTAGTTCTGCTTCTGATGAACCAAACATTAGCGATGCGAAAGCCATTGATGCGTCAGTGGGGAGTTTAGTGTGGGTTCGAAGGAGGAATGGGTCGT GGTGGCCGGGTCGGATTATGGGTATGGATGAGATTTCAGAGGATAGTTTGGTTTCTCCAAGATCAGGCACTCCAGTCAAGCTGCTTGGCAGGGAAGATGC TAGTGTGGATTGGGATAAACTTGAGAAGTCATGGTATAACCTTGAGAAGTCAAAGAGGGTGAAAGCATTTAGGTGTGGTGAATATGATGACTATATTGAG AAGGCTAGGGCTGCTGCAGCCAATGGTAATAGAAAAGCTGTTAAATATGCTCGTAGGGAAGATGCTATTCTGCACGCTCTTGAGATTGAGAATGCTCGAC CAATAAGGGATCATATGGATGTTGCGTCTGCATCGAATAATTTAGACCCAGCCCGGGAATCAACAAGCGTGTCTCTTTCTGGAAAAGTAGATGAGGATGC CAGTGATGGTGGCAGTGATGCCAAGGGCTTGGAAAATGATTCAGGTCCTGTTTTGGATCCAAACCAGGGTTCAGATATTGACTCAGCACCAGAATTATCG CAATCTGGAATATCTTTTGAAGAGCCGAATCATGTTGATGCATCGAAAGTGCCATCTCTACAAGGAAAGAGGAGGAAGACACCGAATGATTCTGAGGATG ATGGGACAGAAGGAACTAAACGTATGAGAGGACTCGAGGACCTTGGCATGGGCATAGCGGATTATAATGGTTGCAATGGTTTGTCTAATGGCAGTCCTGT TAATGTTAGCAAAAGTTGCAGTCCATCTTTGAAGAGAAAGAGAACTCAAGTGGCAAATGTTCATGAGTTCTTGAAAAGGAGAAATCGCCGCAGGCCACTG ACTAAGGTTTTGGAGAGTACAGCTATGGTGTCTATTCCAGTTGGCTGTGACCAAAGTGGTTCACCGCCGGAAGGATTGTCTGACAGCAAGGTCTCTGGTC TACAATCTAATGAATCTAGAAAAGGTCCTGTGGGTAATGCTAACTCTGACAGCACCGGGGTTTCATGTGAAAACGGTTCCTCCCTGAACCCTTCCGAACA TGCTTGTGATGTTTCTCTCACAGACAAGGTTGTCAAAGAGAAGGATATGCTTGCTCCAGCAAGATCATATCAGAATGACTCTTCAGACACGTTGTTCGAT GTTCCTTTTCTCGACGAAGAGAAACCCTCTCCAAGACATCTAGTCAGCGGACAGCAATCCGGTCCAGGATCGTTGCAGAATGAGGCAATTAAAGAAGAGT CCGCTTCGAAATGGCAACTAAAAGGAAAGAGGAATTCCAGACACACGAAGAAGAACGGGAAACAAGTTAGGAAATACACGGATTTGGATGACGACGCCGG TCCTTATTTCCCAGTTGTAGAGCAGTTGGATCGATTCAACAACCAAAATCCTGACGGTACACTTGGTGCTAAAGACGAGCTCGATGGGTTCCAGGATTGG AACCGGTCTTACAATTTCAGGGAGGATCTAGCTCTACCGTCCCAGAGAATGCTGCCATATCGTCAATCTCGGTTTATGCTCAATTCCCGGTACGAAACCA CAGAGTTCCCTGTTAGGAAGGTAATCGCTGACGCGAACCTCTACGATGTGAAGCTGGAAGTGAAATCAAACTACCAGCCACAACACGTCCCATTGGTTTC CTTGATGAGTAAGTTCAACGGCAAAGCGATCGTGGGCCATCCTCTTACTGTAGAGGTTTTGAATGTCGGTGAAGATCCTAGGAAGAAGAGCTCGGGAGGT GGAAGAGTCGCTGCTGCTACGAAACGAATGTCACGGAAAAGACGGTTTAAAAGGAAAGGAAGCAAAAGGCTGAGCAAGTCAGGACTGTTGTCAAAAAAGA TCAGGAAACTATCGTCGCTTACTGGCGGTAAGAAGGTAGAAGTCGTGAAGAAAGCAAATGGATCGACTGCTGCTGCTGCTGTAGTGGCTTGTATTCCTCT GAAGCTAGTTTTCAGCCGGATAAACGAGGCAGTGAATGGCTCAGCGCGGCACCCGACGTGA
AA sequence Show only first row Show all	>Lus10006874 pacid=23144389 polypeptide=Lus10006874 locus=Lus10006874.g ID=Lus10006874.BGIv1.0 annot-version=v1.0 MGSSASDEPNISDAKAIDASVGSLVWVRRRNGSWWPGRIMGMDEISEDSLVSPRSGTPVKLLGREDASVDWDKLEKSWYNLEKSKRVKAFRCGEYDDYIE KARAAAANGNRKAVKYARREDAILHALEIENARPIRDHMDVASASNNLDPARESTSVSLSGKVDEDASDGGSDAKGLENDSGPVLDPNQGSDIDSAPELS QSGISFEEPNHVDASKVPSLQGKRRKTPNDSEDDGTEGTKRMRGLEDLGMGIADYNGCNGLSNGSPVNVSKSCSPSLKRKRTQVANVHEFLKRRNRRRPL TKVLESTAMVSIPVGCDQSGSPPEGLSDSKVSGLQSNESRKGPVGNANSDSTGVSCENGSSLNPSEHACDVSLTDKVVKEKDMLAPARSYQNDSSDTLFD VPFLDEEKPSPRHLVSGQQSGPGSLQNEAIKEESASKWQLKGKRNSRHTKKNGKQVRKYTDLDDDAGPYFPVVEQLDRFNNQNPDGTLGAKDELDGFQDW NRSYNFREDLALPSQRMLPYRQSRFMLNSRYETTEFPVRKVIADANLYDVKLEVKSNYQPQHVPLVSLMSKFNGKAIVGHPLTVEVLNVGEDPRKKSSGG GRVAAATKRMSRKRRFKRKGSKRLSKSGLLSKKIRKLSSLTGGKKVEVVKKANGSTAAAAVVACIPLKLVFSRINEAVNGSARHPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Lus10006874 [exp]	0	1
AT3G21295			Tudor/PWWP/MBT superfamily pro...		Lus10037614 [exp]	1.0	0.8301
AT5G55040			DNA-binding bromodomain-contai...		Lus10043121 [exp]	1.4	0.7691
AT1G03910			unknown protein		Lus10027731 [exp]	6.0	0.7110
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	10.7	0.7660
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	17.7	0.6542
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	28.8	0.6870
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10008297 [exp]	29.1	0.7006
AT3G54620	bZIP	BZO2H4, ATBZIP2...	BASIC LEUCINE ZIPPER O2 HOMOLO...		Lus10018759 [exp]	29.5	0.6279
AT4G12640			RNA recognition motif (RRM)-co...		Lus10025188 [exp]	29.5	0.6891
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	30.0	0.6701

Compare expression of checked genes

Lus10006874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.