Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67120 453 / 3e-134 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037615 [exp] 129 / 3e-35 AT1G67120 64 / 7e-14 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1) Lus10037616 [exp] 138 / 8e-35 AT1G67120 107 / 6e-25 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039100 [exp] 574 / 2e-175 AT1G67120 4856 / 0.0 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006875 pacid=23144408 polypeptide=Lus10006875 locus=Lus10006875.g ID=Lus10006875.BGIv1.0 annot-version=v1.0 ATGTTAACAGAAGAAGTGCTGTTGCTCGGAACGGTGGAAAGCGCGCACCACCTTCAGTCTTGTCAAAACGTGAAGCCTGCAGCAAATCATGTTCTTGAGG TTATGAACAAGTTCACTCCATTGATCAAGAAAGCCAAGGAATCACTTGACAACCATCTTCTGGGATCCCATTGTGGGATGGTGCAAATTGTTTCTGAGGG AGCATTGGATAAGGACCGTAGGCAAGCCGGTCCTTACGCTGTATCGGAGCAAATGAAACAGTCCCTCTACACAAACTTCCAAGTCATCAGCGAGTTCGAA GAGCATCTTCTCGATCTGCGTAAGCTGGAGTTCAGTAAAACTGCAGTATTGCAGACTTTGCTCTCTGATTTTGATGCCGAGTTCGAGAAGGGCAAGCGGT TGGCTGAGGAGCTTGACTATAAACTGAAGACAATAACCATGTCTGAAGAGGTTGATCAGTGTGATCAGAGTTCTTCCGAGCTCGAAATTTTTCATGAGTC CTTCAGAAGAACTATACAGCTTGCCCAGAATGCATTGCAGTCACAAAACAATGTAGATCGTCTTCCAAAAGAACCAAGTAGGGGCATTACCTCATGGGAA AGTTTATTTAAATCACATGTGGAAAACCTCAATCTGGATGATCTGTGTAAAAGTTTTCTTGAGACAATTGACAACGCTGAATATCTGCTGATGCATCAAT CGGGTGAGGCTTCTTCCGGTCTTCATTCTCGGCTCGGACTCTGTTTCGGGCAATTACACACGCTTATGGATGTAGTCTCGAGTCTTGGCGATACATTGCT TTCTGATCTTGTGGGGATGAATAAAGCAATAGCTGTTATGACTCGTGAGTTGGCGGGTGTTCTAGCGTCTTTGTTCTCCAAAGGGTTCCGGATGCCTTCA AAGGACGAGGTTGATGATGATGGTGCTTCCAATGAAGTTACTGGAACTGGCATGGGTGAAGGACAAGGACATAATGATGTCAGCGATCAGATAACTGACG AGGACCAACTGCTTGGAGCTTCTGAAAAGGGGGAAGACCAGAATGCCAATGGTGAGATTCCAAGTAAGAACGATAAAGGGATAGAGATGGAAGAGGATTT TGACGGCGACACATACAGTCTCACCGAAGATGACTCCGGCGAGGAAGATGATAACCAAAACGACAACGAGGATGATGAAGTAAAACTGGACGATACTATG GGAGAAACTGGACCGGATAGCGAGGCAGTTGACCAGAAACTTTGCGATAAAGAGGAAGACGAAGAAAATCTTCAAGAGAAAACTGAAAAGTATGAAGCTG GATCGTCTTCTGTCAAGGATAAAGATATGAGCAATAGAGAACTTAGAGGAAAGGATGACGAAGCTGGCGAGGTCAGTGGCAATGAAGAAGAAGAAGGTAA TAAAGGAAAGGATGATGATAATGGTGGAGATGCGGATCCGAATAATGATACAGAAGAGAATGCAATGGAAGATGATATGAAGTTTGATAAGGAAGATGCG TATGCTGATTCTACTGATCTTAAGGTTGACAAGCCGGACGATATGGACATAGATGAGAAGCAGGAGGACGAGGTTTCGAATCCCGAAGAAGAAGATGAAG GATCGGACGGCTCTGATGATGCTTTGGAGAAAGCCGAGGACGATAAAAACGGTGGAGGAGATGAGACTATGGAGGATGCTGCTGCTGATGCTGATAATGA ACAGCAAGCAGGAAATCCAGAGGAGGATCGTGATACTGAAGAGAATCTGGAGACGAAACCGATTTCGGACAGGAAGGACGAGTTGAGAACCGGAGTTTCC GAATTTAATGGTGATCAAGCACCGAACAACGCGGCATCCGCAAGTCAACCGAACGGAGAAAGTCAAGCTTCGGATTCGAGGAGTGTACCCGCTGCGGATG TGTACAGTTGGAATAACGAAGTTGCTCCAAGGAGGAATGTGCCTTCTGGTGCTAACTCCGACATGGAAGTGATGGCCGTTGATCCATCGGATAGCGGGAT ACTAAACGAAGATCAAAAGCATAATCCACCGGCGGCGGCGGAGGAGCAAGATTTGTCGTCTTCGTCGCTTCAGAAATCGCAACCGAATCCTTACAGGAGT ATTGGAGATGCGTTTGAGAAATGGAAGGAAAGAGCCAAAGTGACTAGTGATCTTCAAGCTGAAGAAGACCCTCCTGTTGAGATGGAGGATACTAACGCAG ATGAGTATGCGTACGTTCCTGATGGCGAAAAGGGAACCGAACAGGCTTTAGGACCTGACATGCATAAACAGGGCGATCCGAAAAACGTCTCTGGTATTAA TAAGCAGCAGGAAGAGCAGGAGGATCGTTCCGCAGATGAAATCAGCATGAACAATCCGGAAAACCCGGCTGCTGCTTTCAGGAAAGAGAAGATTGAGCAA CATCATCAGTTGCAGAGTTCAGAGATGGGGAAATTGAAAGAAGAGGACGAAGATCAGGAGATGCCAGACTGTGATGATCATAACAACAATAACAATCGCA ATCAAGCAAGTTCGATCGAGAATGTCGTCGAGATCAAGAGATTGAATGATTTCAGTGACCTGTCGATAACCGAAGACATCGAGCTGGGGAAATCGCTCGA TCTTGACGTTGAAGTGAAGACCAATTCGACGTGGAGAGGATACGAGCTAAAAACGAGGAGGCTATCACAGGAGCTCTCTGAACAACTGCGTCTCGTTCTG GAGCCAACAGTGGCAAGCAAGCTGCAAGGAGACTACAAGACGGGGAAAAGAATCAACATGAAGAAGGTGATTCCGTACATCGCGAGTCACTACAGGAAAG ACAAGATATGGCTGAGGAGGACGAAGCCGAACAAGCGCGATTACCAGGTCGTGATCGCTGTCGACGACTCGCGGAGCATGTCGGAGCGCGGGTGCGACAA AGTCGCCGTCGAAGCTCTGGTTACGGTATGCCGCGCCATGTCTCAGCTCGAGCTAGGGAACTTTGCCGTCACGAGCTTCGGAAAGAAAGGGAACATCAAC TTACTCCATGATTTTGAACGGCCGTTTACTGGGGAGGCCGGAGAGAAGATCATTTCCAGTTTGAGGTTCCGGCAAGAAAACACCATCTTCGACAAACCGA TCGCTGATCTGTTAAAGTATTTGAACAACTTGCTAGACTCGGCGGTTGCACGTGCTAGGCTTCCTTCCGGCCAGAATCCTCTCCAGCAGCTTGTCTTGAT CATCGGTGACGGCCGCTTCCATGAAAAGGGATTGAAGCATTACGTGAGGGATTTCTTGAGCCAAAAGAGAATGGTGGCGTTCCTGCTCCTGGACAATCCT GAAGATCCTGTGGCAAAGCAGGAGAAAGCGTTGTTTGAGGACGGAAAGTTACTGAAGGAGTTGTATATGGATTCGTTCCCGTTTCCGTACCACATTGTGT TGAAAGATATCGAAGCGCTTCCGAGGACGCTGGCGGATTTGCTAAGGCAGTGGTTGGAGATTATGCAGTCCTTCAAGGAGTAG
AA sequence Show only first row Show all	>Lus10006875 pacid=23144408 polypeptide=Lus10006875 locus=Lus10006875.g ID=Lus10006875.BGIv1.0 annot-version=v1.0 MLTEEVLLLGTVESAHHLQSCQNVKPAANHVLEVMNKFTPLIKKAKESLDNHLLGSHCGMVQIVSEGALDKDRRQAGPYAVSEQMKQSLYTNFQVISEFE EHLLDLRKLEFSKTAVLQTLLSDFDAEFEKGKRLAEELDYKLKTITMSEEVDQCDQSSSELEIFHESFRRTIQLAQNALQSQNNVDRLPKEPSRGITSWE SLFKSHVENLNLDDLCKSFLETIDNAEYLLMHQSGEASSGLHSRLGLCFGQLHTLMDVVSSLGDTLLSDLVGMNKAIAVMTRELAGVLASLFSKGFRMPS KDEVDDDGASNEVTGTGMGEGQGHNDVSDQITDEDQLLGASEKGEDQNANGEIPSKNDKGIEMEEDFDGDTYSLTEDDSGEEDDNQNDNEDDEVKLDDTM GETGPDSEAVDQKLCDKEEDEENLQEKTEKYEAGSSSVKDKDMSNRELRGKDDEAGEVSGNEEEEGNKGKDDDNGGDADPNNDTEENAMEDDMKFDKEDA YADSTDLKVDKPDDMDIDEKQEDEVSNPEEEDEGSDGSDDALEKAEDDKNGGGDETMEDAAADADNEQQAGNPEEDRDTEENLETKPISDRKDELRTGVS EFNGDQAPNNAASASQPNGESQASDSRSVPAADVYSWNNEVAPRRNVPSGANSDMEVMAVDPSDSGILNEDQKHNPPAAAEEQDLSSSSLQKSQPNPYRS IGDAFEKWKERAKVTSDLQAEEDPPVEMEDTNADEYAYVPDGEKGTEQALGPDMHKQGDPKNVSGINKQQEEQEDRSADEISMNNPENPAAAFRKEKIEQ HHQLQSSEMGKLKEEDEDQEMPDCDDHNNNNNRNQASSIENVVEIKRLNDFSDLSITEDIELGKSLDLDVEVKTNSTWRGYELKTRRLSQELSEQLRLVL EPTVASKLQGDYKTGKRINMKKVIPYIASHYRKDKIWLRRTKPNKRDYQVVIAVDDSRSMSERGCDKVAVEALVTVCRAMSQLELGNFAVTSFGKKGNIN LLHDFERPFTGEAGEKIISSLRFRQENTIFDKPIADLLKYLNNLLDSAVARARLPSGQNPLQQLVLIIGDGRFHEKGLKHYVRDFLSQKRMVAFLLLDNP EDPVAKQEKALFEDGKLLKELYMDSFPFPYHIVLKDIEALPRTLADLLRQWLEIMQSFKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	0	1
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	6.0	0.8864
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	6.3	0.9001
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	8.5	0.8593
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	9.5	0.8659
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	14.0	0.8600
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	14.1	0.8581
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10032091 [exp]	18.0	0.7705
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	20.6	0.8605
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10018858 [exp]	20.7	0.8502
AT1G26170			ARM repeat superfamily protein...		Lus10035079 [exp]	21.0	0.8519

Compare expression of checked genes

Lus10006875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.