Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13930 682 / 0 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 680 / 0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G52200 310 / 3e-99 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G34430 184 / 7e-53 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G06850 151 / 1e-40 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT5G55070 122 / 3e-30 Dihydrolipoamide succinyltransferase (.1) AT4G26910 120 / 3e-30 Dihydrolipoamide succinyltransferase (.1.2.3) AT3G25860 69 / 2e-12 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037617 [exp] 827 / 0 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 320 / 4e-103 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 320 / 5e-103 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10041467 [exp] 177 / 2e-50 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10034304 [exp] 170 / 2e-47 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10037492 [exp] 146 / 2e-38 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10043116 [exp] 142 / 2e-37 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10006498 [exp] 141 / 3e-36 AT3G06850 558 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Lus10043117 [exp] 122 / 6e-30 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G043900 [exp] 701 / 0 AT3G13930 771 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.001G198000 [exp] 690 / 0 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 330 / 1e-106 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.013G114300 [exp] 204 / 3e-60 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 197 / 1e-57 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 189 / 2e-54 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 181 / 1e-51 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G011300 [exp] 149 / 9e-40 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.008G219700 [exp] 130 / 5e-33 AT3G06850 518 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.011G089200 [exp] 118 / 9e-29 AT5G55070 562 / 0.0 Dihydrolipoamide succinyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF00198 [flax] [poplar] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme CL0105 [flax] [poplar] PF02817 [flax] [poplar] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Lus10006877 pacid=23144383 polypeptide=Lus10006877 locus=Lus10006877.g ID=Lus10006877.BGIv1.0 annot-version=v1.0 ATGCATATGTGGGTGCACAAAAAGGAAGCTTCTCCTGCTCTCTTAATGGCACTCTCACAAACACTCTCAAGCCGAGCCTTTTCATCCGACTCAGCTCTCC CTGCACATCAGGAGATTGGAATGCCATCTCTTTCACCAACAATGACTGAGGGGAATATAGCAAGATGGCTCAAGAAAGAGGGCGACAAAGTCTCACCTGG TGAAGTGCTTTGTGAAGTAGAAACAGATAAAGCAACCGTTGAAATGGAATGCATGGAAGAAGGTTTTCTTGCAAAGATTGTGAAGAGGGATGGAGCAAAA GAAATTCAAGTAGGTGAGATAATTGCAATTACAGTAGAGGATGAGGAAGACATTGCAAAGTTTAAGGATTACAGCCCTTCTGCTTCAGGATCTAGTCCAG AACCACTTAAGGAGGCATCTTCCTCTGCTCCACCTGTGAAGGAGCCAGTTAGTTCTCCAGTGCCGGAGGTCTCCAAGTCCACTTCCGCATCTGCTGATGA TCGCATTTTCGCTAGCCCTTTGGCAAAGAAATTGGCTGAAGAACAAAAAGTATCTCTCTCAGAAATCAAAGGAACGGGTCCTGATGGAAGCATAGTGAAG GCAGATATTGATGATTACTTGGCTTCACGTGGTAAGGAAGTTTCTGCAACTGCAACAACGGCAAAGACCAAAGGGCTACCTGATGCTGCTTTGGATTATG TTGACATCCCTCATACTCAAATTAGAAAGGTCACCGCTGCTCGCTTATTACTTTCAAAGCAGACCGTTCCTCACTATTACTTGACCGTGGATACATGTGT TGATAAACTTATGGAATTGCGCAGCAAACTCAATTCCTTGCAAGAGGCCTCAGGTGGGAAGAGGATATCAGTGAATGATCTTGTGATCAAGGCTGTTGCT TTGGCCCTAAAAAAAGTTCCACAATGCAATAGTTCATGGACTGATAATTGTATTCGCCAGTACAAGAATGTAAATATCAATGTAGCAGTACAAACAGACA GTGGTCTTTACGTTCCAGTAATCAGGGATGCTGATAAGAAAGGTTTATCGACAATAGGCGAGGAAGTCAAGCATTTGGCTCAAAAGGCCCGGGACAATAG CTTAAAGCCAGAAGATTACGAGGGAGGAACATTTACGGTGTCTAATTTGGGAGGGCCTTTCGGCATCAAGCAGTTCTGTGCCATTGTGAATCCTCCTCAG GCCGGAATTTTAGCTGTTGGTTCAGCGGAAAAGAGGGTAGTCTCTGGATCTGGCTCCGATGCCTACTCGTTTGCTTCATTCATGGCAGTCACACTAAGCT GCGACCATCGTGTTATTGACGGTGCCATTGGTGCGGAGTGGCTCAAAGCATTCAAGAGCTACATCGAGAACCCGGAATCGATGTTGCTGTAA
AA sequence Show only first row Show all	>Lus10006877 pacid=23144383 polypeptide=Lus10006877 locus=Lus10006877.g ID=Lus10006877.BGIv1.0 annot-version=v1.0 MHMWVHKKEASPALLMALSQTLSSRAFSSDSALPAHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGFLAKIVKRDGAK EIQVGEIIAITVEDEEDIAKFKDYSPSASGSSPEPLKEASSSAPPVKEPVSSPVPEVSKSTSASADDRIFASPLAKKLAEEQKVSLSEIKGTGPDGSIVK ADIDDYLASRGKEVSATATTAKTKGLPDAALDYVDIPHTQIRKVTAARLLLSKQTVPHYYLTVDTCVDKLMELRSKLNSLQEASGGKRISVNDLVIKAVA LALKKVPQCNSSWTDNCIRQYKNVNINVAVQTDSGLYVPVIRDADKKGLSTIGEEVKHLAQKARDNSLKPEDYEGGTFTVSNLGGPFGIKQFCAIVNPPQ AGILAVGSAEKRVVSGSGSDAYSFASFMAVTLSCDHRVIDGAIGAEWLKAFKSYIENPESMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10006877 [exp]	0	1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008044 [exp]	1.0	0.8548
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	5.1	0.8210
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	6.7	0.7876
AT5G64460			Phosphoglycerate mutase family...		Lus10032819 [exp]	9.8	0.7801
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	14.9	0.7777
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10015463 [exp]	15.0	0.8134
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	16.4	0.7259
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	16.9	0.7827
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	24.7	0.8064
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	24.8	0.7332

Compare expression of checked genes

Lus10006877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.