Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13920 759 / 0 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 754 / 0 EIF4A-2 eif4a-2 (.1.2) AT1G72730 729 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 477 / 3e-168 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 433 / 6e-151 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 258 / 2e-81 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 256 / 4e-80 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 254 / 8e-80 ATRH8 RNAhelicase-like 8 (.1.2) AT5G11170 220 / 2e-67 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 220 / 2e-67 DEAD/DEAH box RNA helicase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037620 [exp] 818 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017153 [exp] 758 / 0 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 549 / 0 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017407 [exp] 484 / 8e-171 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 474 / 8e-167 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 333 / 1e-112 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10014783 [exp] 256 / 3e-80 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017804 [exp] 255 / 6e-80 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 251 / 2e-78 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G061050 [exp] 779 / 0 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 770 / 0 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 768 / 0 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 764 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.005G093900 [exp] 473 / 2e-166 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 472 / 5e-166 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.002G157500 [exp] 260 / 4e-82 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 258 / 4e-81 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G253100 [exp] 218 / 2e-66 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 217 / 4e-66 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10006878 pacid=23144411 polypeptide=Lus10006878 locus=Lus10006878.g ID=Lus10006878.BGIv1.0 annot-version=v1.0 ATGGCAGGTTTGGCACCGGAAGGATCCCAGTTTGATGCTCGTCAATTTGATCAGAAGATGGAGCTGCTCTCAACTGATGCTCAAGATTTCTTCACCTCAT ATGATGAGGTCTATGAAAGTTTTGATTCAATGGGGTTGCTGGAAAACCTTCTTAGGGGTATCTACGCCTATGGTTTTGAGAAGCCTTCTGCAATCCAACA GAGGGGTATCGTTCCCTTCTGCAAGGGTTTCGATGTTATCCAGCAGGCACAATCCGGAACTGGCAAAACAGCAACTTTCTGCTCTGGAATTCTGCAGCAA CTTGATTACAGTATAGTCCAGTGCCAAGCACTGGTCCTTGCTCCAACCAGGGAACTGGCCCAACAGATTGAAAAGGTCATGAGAGCTCTGGGAGATTACC TTGGGGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTCCGTGAGGACCAGCGTATCCTCCAAGCCGGTGTTCATGTAGTTGTCGGCACTCCTGGTCG TGTATTTGATATGTTGAGGAGGCAATCACTTCGACCCGACAACATTAAGATGTTTGTTCTTGATGAAGCCGACGAGATGCTTTCTCGCGGCTTCAAGGAT CAGATCTACGATATCTTCCAGATGCTTCCAGCGAAGGTACAGATCGGGGTCTTTTCCGCAACAATGCCACCCGAAGCTCTCGAGATCACCAGGAAGTTCA TGAACAAGCCTGTTAGAATCCTGGTCAAGCGCGATGAGCTGACCCTCGAGGGTATCAAGCAGTTCTATGTGAACGTCGAGAAGGAAGACTGGAAGCTCGA GACTCTCTGTGACCTCTATGAGACACTGGCCATCACTCAGAGCGTCATCTTCGTGAACACCCGACGCAAGGTCGACTGGCTGACCGACAAGATGAGGGCC CGTGACCACACTGTCTCGGCCACCCACGGAGACATGGACCAGAACACCCGCGACATCATCATGAGGGAGTTCCGATCCGGGTCGTCCCGTGTTTTGATCA CCACCGACTTGCTTGCTCGTGGAATCGACGTGCAGCAAGTGTCCCTGGTCATCAACTACGACCTTCCGACCCAGCCGGAGAATTACCTTCACAGGATCGG TAGAGGAGGGCGGTTCGGGAGGAAGGGTGTTGCGATTAACTTTGTGACCAAGGAGGATGAGAGGATGCTGGCTGATATCCAGAAGTTTTACAATGTTACT GTTGAGGAGCTGCCTTCCAACGTTGCCGATCTGCTTTAA
AA sequence Show only first row Show all	>Lus10006878 pacid=23144411 polypeptide=Lus10006878 locus=Lus10006878.g ID=Lus10006878.BGIv1.0 annot-version=v1.0 MAGLAPEGSQFDARQFDQKMELLSTDAQDFFTSYDEVYESFDSMGLLENLLRGIYAYGFEKPSAIQQRGIVPFCKGFDVIQQAQSGTGKTATFCSGILQQ LDYSIVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKD QIYDIFQMLPAKVQIGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRA RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRGGRFGRKGVAINFVTKEDERMLADIQKFYNVT VEELPSNVADLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10006878 [exp]	0	1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	12.5	0.8233
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10004946 [exp]	15.5	0.8220
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028160 [exp]	16.7	0.8230
AT1G13870		DRL1, AtKTI12	DEFORMED ROOTS AND LEAVES 1, c...		Lus10037100 [exp]	17.6	0.7503
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10020738 [exp]	25.8	0.8136
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10034776 [exp]	37.9	0.7977
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	44.2	0.7716
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Lus10021951 [exp]	46.1	0.7066
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	73.3	0.7548
AT5G03070		IMPA-9	importin alpha isoform 9 (.1)		Lus10001480 [exp]	75.6	0.7058

Compare expression of checked genes

Lus10006878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.