Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72710 618 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 600 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 598 / 0 CKL12 casein kinase I-like 12 (.1) AT2G19470 552 / 0 CKL5 casein kinase I-like 5 (.1) AT1G03930 515 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 515 / 0 CKL7 casein kinase I-like 7 (.1) AT3G23340 511 / 1e-180 CKL10 casein kinase I-like 10 (.1) AT5G43320 498 / 8e-175 CKL8 casein kinase I-like 8 (.1) AT4G14340 496 / 3e-174 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT4G28540 496 / 6e-174 CKL6, PAPK1 casein kinase I-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037621 [exp] 827 / 0 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 726 / 0 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10027628 [exp] 636 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10011940 [exp] 613 / 0 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10033913 [exp] 519 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10022029 [exp] 516 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10042570 [exp] 514 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 512 / 2e-180 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10014661 [exp] 509 / 1e-179 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197600 [exp] 659 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 654 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 644 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 641 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.002G036000 [exp] 518 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 517 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.005G226900 [exp] 514 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.008G168100 [exp] 508 / 3e-179 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 505 / 6e-178 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G041000 [exp] 483 / 2e-169 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006879 pacid=23144417 polypeptide=Lus10006879 locus=Lus10006879.g ID=Lus10006879.BGIv1.0 annot-version=v1.0 ATGGAGCCTCGCGTCGGTAACAAGTTTCGTCTCGGTCGGAAGATCGGCAGCGGATCATTTGGAGAGATCTATCTCGGTACTAATGTGCAAACAAACGAGG AGGTTGGAATTAAGCTCGAAAATGTGAAGACAAAGCATCCACAGTTGCTGTATGAATCGAAGTTGTATAAACTACTTCAAGGAGGAACTGGAATTCCGAA TGTTAAATGGTTTGGAGTAGAAGGGGAGTACAATGTTCTTGTGATGGATTTACTGGGACCCAGTCTTGAAGATCTATTCAACTTTTGCAGCAGAAAAATG TCTCTTAAGACTGTACTCATGCTTGCTGACCAAATGATTAACCGAGTTGAATTTGTCCACTCCAAATCATTTCTACATCGAGATATCAAACCGGACAACT TTCTTATGGGTTTAGGAAGGCGTGCCAATCAGGTTTACATGATTGACTTCGGGCTGGCTAAGAAGTATAGGGACACATCAACGCATCAACATATTCCTTA CAGGGAGAATAAGAATTTGACGGGAACGGCAAGATATGCAAGCATGAACACCCACCTTGGAATTGAACAAAGCCGGAGGGATGATCTGGAATCTCTTGGA TATGTATTTATGTACTTCCTTCGAGGAAGTCTTCCCTGGCAGGGGCTAAGGGCTGGAACTAAAAAGCAGAAGTATGAAAAGATCAGTGAAAAGAAAGTGT CAACTTCTATCGAGGCTTTATGTCGAGGCTATCCTACAGAATTTGCATCTTACTTTCATTACTGTCGGTCATTGCGTTTTGATGACAAGCCAGATTATGC ATACCTGAAAAGGCTATTCCGTGATCTTTTCATTCGTGAAGGTTTCCAGTTTGACTATGTTTTTGACTGGACGATTCTGAAATATCAGCAGTCGCAGATT TCTAATCCTCCCACTCGTCCTATTGGTGGAGCCGCTGCTGGACCCAGCGCTGGAGCGGCACCAACGGGTACGAATGCCGATAGACAGCAAGCTGGCAGCG GGGAAGAAGGTAAACCTGGTTGGTCTTCAAGTGATCCCCCAAGAAGAACTTCGGGGCCAATTCTAAATTCCGCAACTCTATCCAAGCTAAAGAATCCTGT TGTCAATGAACCAAAAGATGTTCCGTTACCAGCCGCAAATTATGTACGAACTAGCACATCTACAAGAAGACCTGCCGGCCATGAATCAACTCAAGCCGTA CCTTCAGAACAAAGGCAGTCATCTACAGCCAGAAACAGCAACTCCAACACTAAGAACTTAGAATCGACGCTCAGAGGCATCGAGAGCCTCCGGTTCAATA GCGACGAGAGGCTGCTTCACTAG
AA sequence Show only first row Show all	>Lus10006879 pacid=23144417 polypeptide=Lus10006879 locus=Lus10006879.g ID=Lus10006879.BGIv1.0 annot-version=v1.0 MEPRVGNKFRLGRKIGSGSFGEIYLGTNVQTNEEVGIKLENVKTKHPQLLYESKLYKLLQGGTGIPNVKWFGVEGEYNVLVMDLLGPSLEDLFNFCSRKM SLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYMIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLG YVFMYFLRGSLPWQGLRAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQI SNPPTRPIGGAAAGPSAGAAPTGTNADRQQAGSGEEGKPGWSSSDPPRRTSGPILNSATLSKLKNPVVNEPKDVPLPAANYVRTSTSTRRPAGHESTQAV PSEQRQSSTARNSNSNTKNLESTLRGIESLRFNSDERLLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	1.0	0.9612
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	2.0	0.9405
AT3G08790			ENTH/VHS/GAT family protein (....		Lus10011689 [exp]	2.2	0.9335
AT3G48860			unknown protein		Lus10036015 [exp]	3.0	0.9394
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10025262 [exp]	4.7	0.9115
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	6.6	0.9368
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	6.9	0.9304
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	7.5	0.9121
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	8.5	0.9272
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	11.8	0.9272

Compare expression of checked genes

Lus10006879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.