Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019151 [exp] 154 / 2e-44 ND / Lus10000860 [exp] 113 / 5e-28 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10028682 [exp] 105 / 2e-25 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10003922 [exp] 80 / 2e-16 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 80 / 2e-16 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10014682 [exp] 70 / 8e-14 ND 37 / 0.006 Lus10003923 [exp] 71 / 1e-13 ND 40 / 0.002 Lus10036954 [exp] 54 / 5e-08 ND 48 / 5e-06
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006880 pacid=23144414 polypeptide=Lus10006880 locus=Lus10006880.g ID=Lus10006880.BGIv1.0 annot-version=v1.0 ATGTTAAGTATCCTTTCCGTACTAAGATTAAAGTTTGGGGATGTTCCAACGGCTTGGTCCTTCTCCGATACGGTTGGTGGAGATTGGGCTCATTTCGAAG GGCTCAGCCAATGCAGGGGCTCGTTGCGGGTAGGTCATTTATGGGGTTTGCAACTCTGGGTGTACACACTCTCGGAGGATGGTGAATGGTGTCTAAAGCA TCATGTTCGTGATGTCTTAAATGAGTTTCACTGCAGCTCAAGTTCAGCGAGAGACACCTTAAGGCGTAGTCATGGTTGTTACGATGTTGATTTCCGAAGC ATGCGTCCTAGTGATCCGATGGTAGCATATTTGTGCGTGAGAAATATAGTTCTGGAGTGCAACTTTGAAGCCAGAACATTGAAAGTGATTAGGGAAACTT TGCATGAGAATGGGGAGATTCCAAGGTTGTTGCGGTGGCACAGTGTGTATGCATTTGATCTTCCACATTGGCCCACGCCTATTCCTACTCTCCCTGCCTC TGACATGCAGACACTGACTGTGGTTCCAACTTGTCGTAGCCAGTCTCGTGTACCCATTGGATGGCGGGAAGAGAAACTACTGACCGTAAGGGATTACTTT GCCACTATTGCAGGTCTCATTTTCTACCAACCAGAAGCATGTCAAAGAAAGCCCAAGAGTATGATTAGTAAAGTCTGGAAGGAATTCACCGAAAGTGACA CTGCGGATGTGAGCAACTTTGCCTCGTTCTTTGCCATTCTCTGCTTCGTACATGACATACAAACCGCAGCACTGCTTCACTTCCCGCTTCTTCAACGCTG TCTTCCGGATGAGTTGATCCGCCCAGCTAATTCGAGATATTCAAGGCATGGCAACTTCACCCGAGGGTGTCAACGTGAGCATTTCCCCCACCATTTAAGT GTAAGCTTCATTAGGTTATTCAACAGTGATATTCAGCTGGATGATATTTGA
AA sequence Show only first row Show all	>Lus10006880 pacid=23144414 polypeptide=Lus10006880 locus=Lus10006880.g ID=Lus10006880.BGIv1.0 annot-version=v1.0 MLSILSVLRLKFGDVPTAWSFSDTVGGDWAHFEGLSQCRGSLRVGHLWGLQLWVYTLSEDGEWCLKHHVRDVLNEFHCSSSSARDTLRRSHGCYDVDFRS MRPSDPMVAYLCVRNIVLECNFEARTLKVIRETLHENGEIPRLLRWHSVYAFDLPHWPTPIPTLPASDMQTLTVVPTCRSQSRVPIGWREEKLLTVRDYF ATIAGLIFYQPEACQRKPKSMISKVWKEFTESDTADVSNFASFFAILCFVHDIQTAALLHFPLLQRCLPDELIRPANSRYSRHGNFTRGCQREHFPHHLS VSFIRLFNSDIQLDDI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006880 [exp]	0	1
AT2G40460			Major facilitator superfamily ...		Lus10029063 [exp]	13.4	0.6811
AT1G66570		ATSUC7	sucrose-proton symporter 7 (.1...		Lus10028615 [exp]	22.4	0.6174
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	23.2	0.6833
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	33.9	0.6777
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	34.8	0.6804
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10008589 [exp]	44.9	0.6283
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10008483 [exp]	66.0	0.6232
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10032159 [exp]	79.6	0.6049
					Lus10007080 [exp]	105.0	0.5876
AT5G27260			unknown protein		Lus10035759 [exp]	115.7	0.5908

Compare expression of checked genes

Lus10006880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.