Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17500 1883 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1865 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1847 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1834 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1368 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1365 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G25610 1364 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 1335 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1335 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G59820 968 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037622 [exp] 2458 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 2289 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 2212 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1372 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1337 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1331 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1251 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1140 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 964 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197500 [exp] 2069 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 2060 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1461 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1377 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1354 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1338 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1283 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 962 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 946 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 703 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10006881 pacid=23144419 polypeptide=Lus10006881 locus=Lus10006881.g ID=Lus10006881.BGIv1.0 annot-version=v1.0 ATGGGGCGGAGTAGGATAAGGAGCAAGCTACGGCGGAGCCAGCTTCATCCATTTTCGTGTCTAAGGCCGAAAACGAAAGAGGAGCAGGAGCCACATTCAT TAGAAGGCCCTGGTTTCTCCAGAATTGTATATTGCAATGAGCCCTTGAAGCATAAGAAAAGACCCTTGAAATACTGTTCTAATTACATCACAACCACCAA GTACAATGTTATTACCTTCCTCCCCAAGGCACTCTTCGAACAGTTCCGACGCGTTGCCAATATCTATTTTCTCCTGGCTGCAATCCTTTCGTTAACGCCT GTAGCTCCGTTTTCGGCTGTGAGCATGATCTTCCCCTTGGCTGTTGTTGTCGGTATGAGTATGGCGAAGGAAGCTCTCGAAGATTGGGGGAGGTTTGTTC AGGACATGAAGGTAAACACCCGGAAAACTTATGTCCATGATGGAAATGGAAGCTTTGGATTCAAAACTTGGGAGAAGATTCAAGTTGGTGATGTGATCAA AGTAGAGAAAGATCAGTTCTTCCCTGCTGATTTACTTCTGCTTTCCACGAGTTACGAGGACGGGATTTGTTATGTCGAGACGATGAATCTCGACGGGGAG ACTAACTTAAAGATCAAGCGTGCTCTGGAAGTTACCATGTCAATGGACGATGACGACACTTTCAAGGGCATTTCAGGAACGATAAAGTGCGAAGATCCGA ATCCGAGCCTCTACACGTTTGTCGGTAACTTCGAGTATGATCGTCAAGTTTATCCCCTTGATCCGAGTCAGGTTCTCCTTAGAGACTCCAAGCTTAGGAA TACTGCTTTTATCTATGGAGTTGTGGTTTTCACCGGTTTTGACAGCAAAGTGATGCAGAATTCGACAAAGTCTCCTTCGAAAAGGAGCCGAGTTGAAAGG AAAATGGACAAAATCATATATATACTCTTCAGCTTCCTGATTTTGATCTCGGTGATGAGCTCGATCGGGTTTGCGGTGAAGATCAAGTTCCAAATGCCGG ATTGGTGGTATATGCAGCCATGGAAGCCTGAAGATCTGTACAATCCCAACAGTCCTTCGAAATCCGGCCTGGCTCATCTCATTACAGCTCTCATCCTTTA TGGATACCTAATCCCGATCTCTCTGTACGTCTCAATCGAGGTTGTAAAAGTTTGCCAGGCGATGTTTATCGATCAAGACATACACATGTATGACGAAGAA ACCGGGAACACTGCTCATGCGAGAACGTCGAATTTAAACGAAGAGTTAGGGCAGGTTGACACGATCCTCTCCGATAAAACCGGCACATTGACTTGCAACC AGATGGATTTTTTGAAATGCTCCATTGCTGGTAATCCTTATGGTGTTCGTTCGAGCGAAGTCGAACGAGCTGCTGCAAAGCAAATGGCTATGGATCTCGA GGATCAGGATGACGAAAGCTCGAACGGTTCCAGAACTGGTATGCGGAGCTCGTGGGAAAGATCGGGAGATCCGGAGATTGAATTAGAGACTGTCATTACT GCTAGAGATGATACAGATCGAAAACCGGCGATAAAAGGGTTCAGCTTTGAGGATAGCCGGCTCATGGAAGGGAACTGGGTGAATGAGCCTAATCCTGATG TGCTTTTGTTGTTTTTCCGGATATTGGCTACTTGTCATACTGCTGTTCCTGAACTGAACGAAGAGACTGGAGCTTGTACGTATGAAGCTGAGTCCCCTGA TGAAGCGGCCTTTCTCGTTGCTGCAAGAGAATTCGGTTTTGAGTTCTTTAAGAGAACTCAATCGAGTGTCTCGGTTCGTGAGCGAATCCGACCGGGGAAA GTTATTGAAAGGGAGTATAAGATTCTGAATCTGTTGGAATTCACTAGCAAGAGGAAGCGGATGTCGGTAATCGTGCAGGATGAGGACGGGCAGATTCTCG TCCTGAGCAAAGGTGCTGACAGCATTATTTTCGATCGGCTGTCAAAGAATGGAAGAACGTATGAGGAAGCCATGACGAAGCATTTGAACGACTACGGAGA AGCTGGACTACGTACGCTGGTACTCGCTTATAAAAAACTCGACGAAGAAGAGTACAATGCATGGAACAGTAAATTCGTGAAGGCGAAAACTTCCATCGGT GCTGATAGAGACGTGATGCTTGAGCAAGTGGCGGACCTGATGGAGAAGGATCTTATTCTTGTTGGCGCTACAGCTGTGGAGGATAAGCTCCAAAAAGGGG TTCCACAATGCATAGATAAACTTGCACTGGCTGGTCTAAAGATTTGGGTTTTGACTGGTGATAAAATGGAAACTGCAATCAACATAGGATTCGCATGTAG TTTGCTTCGACAAGGCATGAAACAAATAGTTATATCGGCAATGAGTTCAGATAACTCAAGCCAAGAATCAAAGCAGGCTGTGAAGGACGACATATTAAAC CAACTAACCAATGCGTCTCAAATGATCAAGCTGGAAAAAGATCCACACGCTGCATTTGCATTGATTATCGACGGGAAGACGCTAACTTATGCTTTAGAGG ATGATATGAAGCACCAGTTCCTCGCTTTAGCAGTTGATTGTGCTTCTGTAATATGCTGTCGTGTCTCCCCGAGGCAGAAGGCATTGGTAACACGGTTAGT AAAACAAGGCACTGGAAGAACAACGTTGGCAATAGGAGATGGAGCAAATGATGTTGGAATGATTCAAGAAGCTGATATTGGTGTTGGTATCAGTGGCGTG GAAGGAATGCAAGCTGTGATGGCAAGTGATTTCTCGATTTCGCAATTCCGATTCTTGGAAAGACTCCTCGTCGTTCATGGGCACTGGTGTTACAAGAGAA TAGCTCAGATGATTTGCTATTTCTTCTACAAGAACATTGCATTCGGTCTCACTCTCTTCTACTTCGAGGCCTTCACCGCCTTCTCTGGCCAATCTATCTA TGACGACTGGTACATGATTCTGTTCAATGTCCTCCTCACCTCGTTGCCGGTCATTTCACTCGGAGTTTTCGAACAAGATGTTCCTTCAGAAGTCTGCCTA CAGTTCCCTGCATTGTATCAGCAAGGACCTCAGAACCTGTTCTTCGACTGGTACAGGATCCTCGGATGGATGGGGAACGGTCTATACTCCTCCCTCGCAA TCTACTTCCTCAGCATCCTAATCCTCTCCAACCAAGCGTTCCGAGCCGGAGGCCAGACCGCAGACATGGCCGCAGTCGGAACCACCATGTTCTCGTCCAT AGTCTGCACAGTGAACTGCCAGATCGCGCTCACAATGAGCCACTTCACGTGGATCCAGCACGTCATGGTCTGGGGCAGCATATCGACATGGTTCCTCTTC CTCGTGCTCTACGGTATGGTGCCGCCAGCTTACTCAGGGAACGCGTACCAAATCCTTGTGGAGGCCCTTGGCCCCGCGCCAATCTACTGGCTCGCGATCC TTCTCGTGACGATCGCGTGCAACCTCCCTTACCTCGCCCACATTTCGTTCCAGCGGTGCCTCAACCCGATGGATCACCACATCATCCAGGAGATCAAGTA CTACAAGAAGGATGTTGAGGATCAGCATATGTGGAGAAGGGAGAGGTCTAAGGCTAGGCAAGAGACAAAGATTGGAATCACAGCTAGGGTTGATGCCAAG ATCAGGCAATTGAAAGGCAGACTGCATAAGAAGAGCAATTTAGCAGTACACAACAAAAGGCCTTCACAGTCTTGA
AA sequence Show only first row Show all	>Lus10006881 pacid=23144419 polypeptide=Lus10006881 locus=Lus10006881.g ID=Lus10006881.BGIv1.0 annot-version=v1.0 MGRSRIRSKLRRSQLHPFSCLRPKTKEEQEPHSLEGPGFSRIVYCNEPLKHKKRPLKYCSNYITTTKYNVITFLPKALFEQFRRVANIYFLLAAILSLTP VAPFSAVSMIFPLAVVVGMSMAKEALEDWGRFVQDMKVNTRKTYVHDGNGSFGFKTWEKIQVGDVIKVEKDQFFPADLLLLSTSYEDGICYVETMNLDGE TNLKIKRALEVTMSMDDDDTFKGISGTIKCEDPNPSLYTFVGNFEYDRQVYPLDPSQVLLRDSKLRNTAFIYGVVVFTGFDSKVMQNSTKSPSKRSRVER KMDKIIYILFSFLILISVMSSIGFAVKIKFQMPDWWYMQPWKPEDLYNPNSPSKSGLAHLITALILYGYLIPISLYVSIEVVKVCQAMFIDQDIHMYDEE TGNTAHARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGNPYGVRSSEVERAAAKQMAMDLEDQDDESSNGSRTGMRSSWERSGDPEIELETVIT ARDDTDRKPAIKGFSFEDSRLMEGNWVNEPNPDVLLLFFRILATCHTAVPELNEETGACTYEAESPDEAAFLVAAREFGFEFFKRTQSSVSVRERIRPGK VIEREYKILNLLEFTSKRKRMSVIVQDEDGQILVLSKGADSIIFDRLSKNGRTYEEAMTKHLNDYGEAGLRTLVLAYKKLDEEEYNAWNSKFVKAKTSIG ADRDVMLEQVADLMEKDLILVGATAVEDKLQKGVPQCIDKLALAGLKIWVLTGDKMETAINIGFACSLLRQGMKQIVISAMSSDNSSQESKQAVKDDILN QLTNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKHQFLALAVDCASVICCRVSPRQKALVTRLVKQGTGRTTLAIGDGANDVGMIQEADIGVGISGV EGMQAVMASDFSISQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTAFSGQSIYDDWYMILFNVLLTSLPVISLGVFEQDVPSEVCL QFPALYQQGPQNLFFDWYRILGWMGNGLYSSLAIYFLSILILSNQAFRAGGQTADMAAVGTTMFSSIVCTVNCQIALTMSHFTWIQHVMVWGSISTWFLF LVLYGMVPPAYSGNAYQILVEALGPAPIYWLAILLVTIACNLPYLAHISFQRCLNPMDHHIIQEIKYYKKDVEDQHMWRRERSKARQETKIGITARVDAK IRQLKGRLHKKSNLAVHNKRPSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17500			ATPase E1-E2 type family prote...		Lus10006881 [exp]	0	1
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	2.6	0.9251
AT3G45190			SIT4 phosphatase-associated fa...		Lus10021468 [exp]	5.3	0.8746
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10008630 [exp]	8.4	0.9058
AT1G10330			Tetratricopeptide repeat (TPR)...		Lus10030036 [exp]	9.7	0.8990
AT4G39420			unknown protein		Lus10030711 [exp]	12.0	0.8995
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	13.0	0.9025
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	17.7	0.8935
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Lus10022757 [exp]	22.7	0.8863
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10028286 [exp]	23.2	0.8742
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	25.7	0.8977

Compare expression of checked genes

Lus10006881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.