Plant FIBer expression Database

Lus10006882 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32915 111 / 8e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037623
[exp]
277 / 5e-97 AT4G32915 112 / 6e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G058200
[exp]
133 / 2e-40 AT4G32915 144 / 8e-45 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02686 Glu-tRNAGln Glu-tRNAGln amidotransferase C subunit
Representative CDS sequence
>Lus10006882 pacid=23144393 polypeptide=Lus10006882 locus=Lus10006882.g ID=Lus10006882.BGIv1.0 annot-version=v1.0
ATGGCGACCGGAGCCGGAGTCGGAGTCGCGCTGCTCGTTCGCCCATTGTCACTGCTCGGAAGAAGATCTCTATACCTTAACGGCGGCGCATCTCCTTCCT
TTCCCGCCGGAATCAGTTCTTCTTACAGGAAGAAGCAAAACAACAGCGTCGGAAGAAGACTCTTCTCAGCTGGATCGCTAACAGACGGCGAAGCCGCCCC
TGACCTCCGCCGCCTAGCTGAAACTGCCCGAATCTCTCTCACTCAACAAGAGGTGGACGAGCTTGGCCCCAAAATTCAACAAGTAATCGGATGGTTTGGG
CAGCTTCAAGGTGTAGATCTTAATCGGGTTGAGCCTGGAATCCGAGCAGCAACTGCAGCAGAGGCTGAAGAAGGAGTGAACTTGCGAGACGATGTGCCTT
CGACATTCCCGAAAACGGATGCTATCATTGAGGGTATTCCGAGCTACGAGAAACCTTATCTCCGAGTTCCAAAGGTCTTGCACAAGGAGTAA
AA sequence
>Lus10006882 pacid=23144393 polypeptide=Lus10006882 locus=Lus10006882.g ID=Lus10006882.BGIv1.0 annot-version=v1.0
MATGAGVGVALLVRPLSLLGRRSLYLNGGASPSFPAGISSSYRKKQNNSVGRRLFSAGSLTDGEAAPDLRRLAETARISLTQQEVDELGPKIQQVIGWFG
QLQGVDLNRVEPGIRAATAAEAEEGVNLRDDVPSTFPKTDAIIEGIPSYEKPYLRVPKVLHKE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32915 unknown protein Lus10006882
[exp]
0 1
AT5G57970 DNA glycosylase superfamily pr... Lus10026083
[exp]
5.2 0.7991
AT3G22210 unknown protein Lus10003811
[exp]
5.3 0.8574
AT1G69390 ARC12, ATMINE1 accumulation and replication o... Lus10037128
[exp]
5.7 0.8405
AT4G32915 unknown protein Lus10037623
[exp]
10.2 0.7811
AT1G32360 C3HZnF Zinc finger (CCCH-type) family... Lus10000486
[exp]
11.8 0.7750
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Lus10025022
[exp]
12.5 0.7830
AT1G78620 Protein of unknown function DU... Lus10013691
[exp]
16.4 0.7535
AT4G04900 RIC10 ROP-interactive CRIB motif-con... Lus10018362
[exp]
17.4 0.7691
AT3G24590 PLSP1 plastidic type i signal peptid... Lus10034925
[exp]
21.4 0.7665
AT4G04980 unknown protein Lus10018473
[exp]
24.0 0.7437

Lus10006882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.