Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72690 85 / 1e-21 unknown protein AT5G57000 81 / 6e-19 unknown protein AT1G17490 61 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015607 [exp] 176 / 3e-56 AT1G72690 84 / 6e-21 unknown protein Lus10008389 [exp] 74 / 4e-17 AT1G72690 76 / 2e-19 unknown protein Lus10006016 [exp] 68 / 1e-13 AT3G13898 76 / 4e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148000 [exp] 81 / 4e-19 AT5G57000 83 / 2e-20 unknown protein Potri.017G119600 [exp] 73 / 7e-17 AT1G72690 91 / 2e-25 unknown protein Potri.004G095300 [exp] 63 / 3e-13 AT1G72690 57 / 3e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006884 pacid=23144422 polypeptide=Lus10006884 locus=Lus10006884.g ID=Lus10006884.BGIv1.0 annot-version=v1.0 ATGAACAAATTTGAAGAAGAGAAGCACGGGAAGCATCATCACAACTTCATTGCGAAGGCTAAGGAGAAGATTGAGAAAGTGACCCACTCCCCACGCCATC ATCATCATCATCATGACAAGGAAACACACGGAACGAGCAATGACATCGACGAGAACACCTCGGTCGACGAAGTGAGAGGGCCAAATGTGTTTCAGAGAGC TAAAGAGGAGATCGAGGCTCTCGTCGAGACGATTCACCATCATCCCAAGAAGGATGATGAGAAGAAGAGTAGTCATTATCACGACAAGGAAACACATGGA ACGAGCGAGGATATTGATGAGACTACTTCGGTGGATGAAGTTAGAGGGCCGAATGTGTTTCAGAGGGCGAAGGAGGAGATCGAGGCACTCGTTGAGACGA TTCATCATCATCCCAACAAGGAGAAGGAGGAGAAGAAGAGTAGTCATTATCACGACAAGGAAACACACGGAACAAGCAACGACATCGATGAGACCACCTC GATCGATGAAGTGAGAGGGCCGAATGTGTTTCAGAGAGCGAAGGAGGAGATCGAGGCTCTTGTCGAAACGATTCATCATCATCCCAAGAATAAGGAGGAG AAGAGTAGTAAGCATCATAAGTCTCCATCATCCTAG
AA sequence Show only first row Show all	>Lus10006884 pacid=23144422 polypeptide=Lus10006884 locus=Lus10006884.g ID=Lus10006884.BGIv1.0 annot-version=v1.0 MNKFEEEKHGKHHHNFIAKAKEKIEKVTHSPRHHHHHHDKETHGTSNDIDENTSVDEVRGPNVFQRAKEEIEALVETIHHHPKKDDEKKSSHYHDKETHG TSEDIDETTSVDEVRGPNVFQRAKEEIEALVETIHHHPNKEKEEKKSSHYHDKETHGTSNDIDETTSIDEVRGPNVFQRAKEEIEALVETIHHHPKNKEE KSSKHHKSPSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57000			unknown protein		Lus10006884 [exp]	0	1
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10013897 [exp]	5.5	0.8971
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	5.7	0.8931
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	8.7	0.9110
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10035780 [exp]	8.7	0.8764
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	10.8	0.8858
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10017822 [exp]	13.9	0.8815
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000408 [exp]	16.5	0.8956
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	17.9	0.9092
AT1G27000			Protein of unknown function (D...		Lus10037210 [exp]	20.0	0.8537
AT4G22310			Uncharacterised protein family...		Lus10011790 [exp]	20.5	0.8925

Compare expression of checked genes

Lus10006884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.