Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23910 417 / 6e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G30470 408 / 3e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14700 166 / 2e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 155 / 4e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 154 / 2e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 153 / 6e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 148 / 3e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 140 / 3e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G09480 139 / 3e-38 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 133 / 5e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003780 [exp] 567 / 0 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020372 [exp] 237 / 5e-77 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022239 [exp] 181 / 2e-54 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009549 [exp] 169 / 6e-51 AT2G23910 172 / 4e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 161 / 5e-47 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 153 / 7e-44 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10039595 [exp] 151 / 2e-43 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024068 [exp] 153 / 2e-42 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10008774 [exp] 140 / 2e-40 AT5G14700 253 / 5e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100500 [exp] 464 / 2e-166 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G178700 [exp] 460 / 1e-164 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 261 / 2e-86 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 258 / 4e-85 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G079500 [exp] 256 / 2e-84 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G349600 [exp] 183 / 3e-55 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 168 / 2e-49 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 163 / 1e-47 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 158 / 4e-46 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 155 / 5e-45 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10006885 pacid=23156370 polypeptide=Lus10006885 locus=Lus10006885.g ID=Lus10006885.BGIv1.0 annot-version=v1.0 ATGGGTTCATGGATTCACCCAGTTTGTGTTCTTGATGCTTCGAGCTACGTAGGGTTTTGGGTACTCAAGGGTTTGTTGAGTAGAGGGTATTCAGTTCATG CGGCTATTCAGAACAAGAAAGGAGGAGAAGCTACAGAGATTGAGAAGAAAATAAGAGAAATGGCAGTGGAAGAGAAGAAGACGGTAGCTGTATTTGCTGT AGATGTGTTGGATTACCAGACCATTTTAGTTGCTTTGAAAGGCTGCTCTGCCGTTTTCTGCTGCTTGGATTTCCACGATGGATACGACGATGACAAAATG GTGAATTTGGAGGTGAGAGGAGCAATCAATGTGGTGGAAGCTTGTGCACAGACTGATACCATAGCCAAGATAGTGTTCACTTCCTCTTTGACTGCTGCCA TTTGGAGGGAGGATATTTGCTCCGAGAAGGATGTCGATGAGAGGTCTTGGAGTCACCAATCTTTCTGCAGGAAATTCAAGCTATGGTATGCATTGGCAAA GACACTCTCAGAACATGCAGCCTGGGCACTAGCAATGGACAGATCCCTTAACATGGTCTCCATCAACCCTGGTCTCGTCCTCGGCCCCGGTGTTTCCCAA CAGAACCCTCCATCCACCATGGCATACCTCCAAGGTGCGGCTCAAATGTTTGAGAATGGAGTTTTGGCATATGTCGATGTGAAGTTCTTGGCCGATGTCC ACATTCGAGCGATGGAGGATCAATCGACGTGCGGGCGATACTTGTGCTTTGACCAGATTGTGAATACGGAGGGTGAAGCTGTGAAGATTGCGCAGGGATT GAGTCCCTTGATTTCTTTGCCACCAAGGTATGAATGTGGTGGAAGTGAGGCTTATGAGGAGAGATTGAGGAACAACAAGTTAAATAAGCTAGTGGAGGTA AGACCGACCCCCCTTCTGTCTTCGGATAGGTAA
AA sequence Show only first row Show all	>Lus10006885 pacid=23156370 polypeptide=Lus10006885 locus=Lus10006885.g ID=Lus10006885.BGIv1.0 annot-version=v1.0 MGSWIHPVCVLDASSYVGFWVLKGLLSRGYSVHAAIQNKKGGEATEIEKKIREMAVEEKKTVAVFAVDVLDYQTILVALKGCSAVFCCLDFHDGYDDDKM VNLEVRGAINVVEACAQTDTIAKIVFTSSLTAAIWREDICSEKDVDERSWSHQSFCRKFKLWYALAKTLSEHAAWALAMDRSLNMVSINPGLVLGPGVSQ QNPPSTMAYLQGAAQMFENGVLAYVDVKFLADVHIRAMEDQSTCGRYLCFDQIVNTEGEAVKIAQGLSPLISLPPRYECGGSEAYEERLRNNKLNKLVEV RPTPLLSSDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10006885 [exp]	0	1
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	10.8	0.9040
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10024518 [exp]	12.2	0.9179
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10013774 [exp]	18.7	0.8673
AT5G08460			GDSL-like Lipase/Acylhydrolase...		Lus10028685 [exp]	24.8	0.8870
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	24.9	0.8875
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	28.4	0.9033
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	28.8	0.8981
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10006347 [exp]	29.2	0.8469
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Lus10035348 [exp]	31.5	0.8984
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	46.1	0.8839

Compare expression of checked genes

Lus10006885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.