Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027613 [exp] 301 / 5e-99 ND / Lus10007415 [exp] 249 / 2e-78 ND / Lus10023004 [exp] 216 / 1e-68 ND / Lus10039353 [exp] 218 / 8e-65 ND / Lus10033096 [exp] 200 / 7e-62 ND / Lus10026444 [exp] 191 / 3e-56 ND / Lus10007416 [exp] 155 / 8e-44 ND / Lus10023767 [exp] 143 / 1e-39 ND / Lus10017801 [exp] 136 / 3e-38 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006886 pacid=23156374 polypeptide=Lus10006886 locus=Lus10006886.g ID=Lus10006886.BGIv1.0 annot-version=v1.0 ATGCATGCAACTTGCTTCCTGCTCTCTTGCCTACTCCGCCTGGTCCATTTCTGGCGTGACCCACCAGATACATCAGCCTCTACTCTTGCTGTAATTCATA CTCTATGGATTGACCGCTCGGAGTCACTTATTCAAGGATATACAGAGCCATCTCATACATGGGATGTTTTCATTTTGCTGACATTGGGGACGATTTACAA AATTCCACAACCAATCCTTATTGCTGCAAATCCTGAGCAACGAGCGTGTCCAGGTCATCTGACTCTGTTTGTTCTTCCTCAACACCTGGTCAAACCGCTG CTTGAAGACCCACTACACCCCTTCTTCCCTCATGATAATTACAACATTGCACCAGCAGTCATGCCTCGCTCTCTACCGGAATCCCCAAATGTCTGGGCAG ATATTGTTGGTCGCCTTGTGTCAATAACTGAACCGCTTGCTGCAGGTGACAATCTGGTCGATTTCAGTCTTCTGGTTGACGAGCCAAGTGTTGGCCGCAT TTCTGTTCGTTATACATCTTTCTACCAAATGCCAGATTTCGATATTGACCAGATCGCAACCGTTGAACAATTCCATCCCGTCATGGTCATCCTAACGTGT ATCACAAGCTGCGATGTACCAAATATAAAATGGCACCTTCAAGGCACACCGGCATCACGAATTGTCTTAGCACCGTTCCGGCCACCTTTCACCCAGTATT TTGATATATTCTTGCATAATCACATACCTGTACGCCTGGTGAGCCCAACTTTGGACAGTTGCTTCACATTCGTTGGTGGCAACCTCCCACCCAAACTGCA CTTGGCTTCAATTGCTTTTGAGCAACATGCAAAAACATGGTGTCTTATTAGAATTGTTGATGTGCCTCACCACCCAGGCAACGTTATCCACAACAACAAC CGACCTAGTTACTCTGTTATGGTACATTGTTCTGATGCAACGGCAACTACACATATGCTTTTCACCGGACCAGCTGCCACTTTGCTTTTCAAACTGCATC CACATGAATACAATGCACTATCTGCTGAGAGGAAAGAAGCTCTATCTTTGCAGCTCAAAGACCGGTTCTTTGTTGTGGAAGTTCAATTGCTTGAATGTAG GTCTAGCAGCTGTGCCCAATATGTTGTTCAAAATCTTTGGGATCTCGTAGTTGCTTACTACTGA
AA sequence Show only first row Show all	>Lus10006886 pacid=23156374 polypeptide=Lus10006886 locus=Lus10006886.g ID=Lus10006886.BGIv1.0 annot-version=v1.0 MHATCFLLSCLLRLVHFWRDPPDTSASTLAVIHTLWIDRSESLIQGYTEPSHTWDVFILLTLGTIYKIPQPILIAANPEQRACPGHLTLFVLPQHLVKPL LEDPLHPFFPHDNYNIAPAVMPRSLPESPNVWADIVGRLVSITEPLAAGDNLVDFSLLVDEPSVGRISVRYTSFYQMPDFDIDQIATVEQFHPVMVILTC ITSCDVPNIKWHLQGTPASRIVLAPFRPPFTQYFDIFLHNHIPVRLVSPTLDSCFTFVGGNLPPKLHLASIAFEQHAKTWCLIRIVDVPHHPGNVIHNNN RPSYSVMVHCSDATATTHMLFTGPAATLLFKLHPHEYNALSAERKEALSLQLKDRFFVVEVQLLECRSSSCAQYVVQNLWDLVVAYY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006886 [exp]	0	1
AT3G15630			unknown protein		Lus10033048 [exp]	1.0	0.8120
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10018453 [exp]	2.8	0.7657
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10041723 [exp]	6.0	0.7483
AT3G11590			unknown protein		Lus10017001 [exp]	7.3	0.7911
AT3G03773			HSP20-like chaperones superfam...		Lus10010669 [exp]	8.1	0.7775
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10042762 [exp]	15.0	0.7132
AT2G30933			Carbohydrate-binding X8 domain...		Lus10007342 [exp]	16.4	0.7413
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	17.3	0.7353
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	22.8	0.7636
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	29.4	0.7191

Compare expression of checked genes

Lus10006886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.