Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19130 51 / 3e-06 Replication factor-A protein 1-related (.1) AT5G45400 48 / 2e-05 ATRPA70C Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034056 [exp] 427 / 2e-141 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10003025 [exp] 330 / 1e-104 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10036312 [exp] 335 / 4e-104 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023787 [exp] 280 / 8e-86 ND 44 / 3e-04 Lus10016946 [exp] 224 / 6e-65 ND / Lus10042979 [exp] 222 / 2e-61 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10000293 [exp] 201 / 7e-56 ND 48 / 2e-05 Lus10026445 [exp] 198 / 5e-55 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10030315 [exp] 196 / 1e-52 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165480 [exp] 57 / 3e-08 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.019G061550 [exp] 57 / 4e-08 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G182232 [exp] 48 / 1e-05 ND / Potri.006G172600 [exp] 48 / 1e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006887 pacid=23156376 polypeptide=Lus10006887 locus=Lus10006887.g ID=Lus10006887.BGIv1.0 annot-version=v1.0 ATGCTTCTGTCTGAACTCTCACTGGAAAATCCTCAGGTTGAACTCCATCTTTGCCTCTGCCACATGTGGAAGCTGGGAAACCCATCCACACCTGACACAT TTTTCGCTCTGGGCACCATCTGGACTGACGCCGAGGGCGACGCTCTTTATATTTTTGCAGCCGTTCTACAGAAACGGATTGTTGTCGGCTGCGTTTACAA GATTTCGAACTACTCACTTCGCACACCCCGTGAGAAATATCGTACATGCACCTACCTGCATTGGTTGGCTCTAACTGCTGGTACTGAGTTCGCCCTACAG CCTGCTTCGGACCCGCTGTTTGGCCCGGAGGTCCTTGAATATGTCCCCTTCAACAAGTTCCCTTCCCGGATGGGGAAGTGCCCTTATTTGACAGATTTCG TTGGTAAAGTTGTTGGGGCCAGGCCACCAAATTACATCCATCGGCCCACCGGAATTTCGGCGGTCCAAAACTTGACAATTGTGGACAAGAGTGGTTTAGA AGTAGATGTTTCCCTATGGTCTGATCTTGCTTCTGTACTTGATGCTGATGTTGTGGTGTTGGATGACGTTGTTAATCCTGTCGTCGTTGCTTTTACTGGT TTTCGGATTGACACGCACTTCGAAAGAACAACAACATCCAGTGGCCTTGCCAGTCGTCTTTTTTTAGACCCTACTGATGAAGCTGCAGTTGATCTTCGCC AACACTTCACAACAAATCAACGCCCTATCACGTATGTCCAGCCAAAATTTGCAACCCCTGAAAAGATCAGACAACATGTTGAGGCATCCTTTATGAATAT TCATGAATTGCTTGCTATGTATGCAACAGGGGGAGACCATGTGGATTTTGAACCAGCATACCGATGTGTGGCTACGATTCTGGATTTTGATAGCGAGAAG CATTGGTGTTATAGAGCATGCCCATTGTCTTCCCGCGCTGTTGTTGCAAATGGTCATGACTTTTGGTGTAGCGAACATGACACAGTTCTCACACCAGATG TGGCTTACACGTATCCTCAATTCGCATTACTATCAAAAACATTTCTCGTACCTATTTCCTATCCAATGCAACCCTTTCTCATTCCATGTACAAACCTGCT CCCTTTTAGGTATCGCCTGAAATTGCTGGTGTCCGATCCCACCACGCAAGCTACATTCGTTCTTTTGGGCTTGACTGCTGATAGAATTATGCCTATATCT GCGGCCGAACTTGCAAAGGCGTATCCAGATGAATACGGCGAACTTCCACCTCCCTTACGTTTGCTGCTCAACCAGAAAGTGACTTTTGAAGTCCATCTTC CCCAACAGCTATATGTCAATACATTTCCCGACATCAGGATCTCAAAAATATGGGGGTTGGTCATACAACCGGCCCAGCTTGCTGCTGATCTTCCTCCTCC CCCACCACCACGACCACCAAGCCCTCCTGCGCGCCATGACACACCTATCCATCCCGATCCAAATTACGTGTTCCCTATCCCTACTTACATACCACCAACC GAAACATCATTGCCTGCTGCGCACACACTAGCTGCTTCTATTCCTTTGGACCTCCATCACCCTCCAAGCACCCCTTCGAAAGGAAGATCCTTACCTGAGT CATCTCAGTATCCCGTCTTGCATCATATGGATGTCTCTCCTAAAGGAAATGCCCTTGTTACTCTCCGTGGCTGCAAGCCAGCTCTGGAAAAGGCCACCAC CTCTCCACAAAAGAAACATGCATCGGCCCCGAAGGCAAAACCTGGTTCGAAGGCAAAACCTGGTCCGAAGGCAAAATCTGGTCCGAAGGCAAAACCTGGT CCGCAGTCAAAACCTGGTCCGAAGGAAAAACCTGCTCCAAAGGAAGCTGGCCCTATTAAGAAGAAGCCTCAATCAAAGCATGTGGCCCCAAGAACGAACC GTCCAACTGCCATAACGAGGAATCGAGCCAAAACCCTTCTTCCACCTACTACTGTCTCGGAGACGCTTCCTACCAAACGGCTTCGCTCGACTACAGCTCC GATCCAACCAGATATGGACTCCGTCCAAACCATATCTTTTATGAATCATGTGCCCACTGAAGTTGTCGAGCCAAGTTCCTCAGATGACCTCCCTCTTTCA CAACTTATCTACCACAACCTATTATCTTCACATTGCACTTTTACAACAAGCATCCCTACTGCTTCTCAAGCTACACCAGGCCAGCTTGCTTCTGCTGCTT TAGCTTCTTCTCCACTGGCTACTGTCAAACAAGAACACCTTGCAACAAATGCTTTTCGCTGTCCTCCCACTTCATCAATCTGGAAACTCCCTACAATACC ACAACAATCAGAATTTCCTCTGGAATCAGCTTCAGCTATTCGTCGGGCACTGTTTACTGACTAA
AA sequence Show only first row Show all	>Lus10006887 pacid=23156376 polypeptide=Lus10006887 locus=Lus10006887.g ID=Lus10006887.BGIv1.0 annot-version=v1.0 MLLSELSLENPQVELHLCLCHMWKLGNPSTPDTFFALGTIWTDAEGDALYIFAAVLQKRIVVGCVYKISNYSLRTPREKYRTCTYLHWLALTAGTEFALQ PASDPLFGPEVLEYVPFNKFPSRMGKCPYLTDFVGKVVGARPPNYIHRPTGISAVQNLTIVDKSGLEVDVSLWSDLASVLDADVVVLDDVVNPVVVAFTG FRIDTHFERTTTSSGLASRLFLDPTDEAAVDLRQHFTTNQRPITYVQPKFATPEKIRQHVEASFMNIHELLAMYATGGDHVDFEPAYRCVATILDFDSEK HWCYRACPLSSRAVVANGHDFWCSEHDTVLTPDVAYTYPQFALLSKTFLVPISYPMQPFLIPCTNLLPFRYRLKLLVSDPTTQATFVLLGLTADRIMPIS AAELAKAYPDEYGELPPPLRLLLNQKVTFEVHLPQQLYVNTFPDIRISKIWGLVIQPAQLAADLPPPPPPRPPSPPARHDTPIHPDPNYVFPIPTYIPPT ETSLPAAHTLAASIPLDLHHPPSTPSKGRSLPESSQYPVLHHMDVSPKGNALVTLRGCKPALEKATTSPQKKHASAPKAKPGSKAKPGPKAKSGPKAKPG PQSKPGPKEKPAPKEAGPIKKKPQSKHVAPRTNRPTAITRNRAKTLLPPTTVSETLPTKRLRSTTAPIQPDMDSVQTISFMNHVPTEVVEPSSSDDLPLS QLIYHNLLSSHCTFTTSIPTASQATPGQLASAALASSPLATVKQEHLATNAFRCPPTSSIWKLPTIPQQSEFPLESASAIRRALFTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19130			Replication factor-A protein 1...		Lus10006887 [exp]	0	1
					Lus10010883 [exp]	3.5	0.9239
AT4G27450			Aluminium induced protein with...		Lus10011191 [exp]	3.7	0.9326
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10037492 [exp]	10.4	0.9274
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	13.3	0.9259
AT1G27290			unknown protein		Lus10003121 [exp]	14.1	0.9148
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	14.5	0.9142
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015892 [exp]	16.6	0.9192
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	20.0	0.8994
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	20.2	0.9141
AT2G39950			unknown protein		Lus10040223 [exp]	22.2	0.9037

Compare expression of checked genes

Lus10006887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.