Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30860 365 / 7e-122 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT3G59960 88 / 9e-19 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT2G44150 82 / 6e-17 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT1G76710 55 / 7e-08 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G77300 55 / 1e-07 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT5G42400 46 / 6e-05 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G23740 44 / 0.0002 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G05830 43 / 0.0004 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003777 [exp] 621 / 0 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10039118 [exp] 96 / 2e-21 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 89 / 8e-19 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10016600 [exp] 67 / 2e-11 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10000967 [exp] 58 / 2e-08 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10028662 [exp] 56 / 7e-08 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10016788 [exp] 50 / 5e-06 AT2G23740 1325 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10022483 [exp] 49 / 6e-06 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10012513 [exp] 42 / 0.001 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102100 [exp] 407 / 5e-138 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.007G147200 [exp] 94 / 9e-21 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 94 / 1e-20 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G195400 [exp] 69 / 2e-12 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.007G033000 [exp] 58 / 9e-09 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 57 / 2e-08 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G182100 [exp] 57 / 4e-08 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 55 / 1e-07 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G260100 [exp] 50 / 2e-06 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 47 / 3e-05 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006888 pacid=23156373 polypeptide=Lus10006888 locus=Lus10006888.g ID=Lus10006888.BGIv1.0 annot-version=v1.0 ATGCCGGACTTCGGCAATGCTACACTTCACTGCTCTACTCTGAAGAACCTTCCTTCTCCGCACGCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCAGATG GTGAGCTTGAAGGAAACAATAGTCCGGTCAAAGCGCTAGTCAACGGCTGCAACTGGAACCTGAACCTCCGCCTGCAGAACGGGAAGAATCGATGTAATCG AGATTTAATTAGGGTTTTGAGCCGCTGTCGTGGTGGCCTGTCAAGTAAAAAGAGTTGCGGTGCCAGGTGTTTGAAGGATTATGTGAACGATTGGGTTCGG CAGAAGGTGGAAATGGGCGCTTCTTCATCCCAATGCTACCTTCCGTTTCTTGCCGGAGGGAAGAAGATGGTTGAATGTCTTGTTTGCCATCGCTGTATCG ATCCTGAGGAGGAGCTTGCTTCTTGCTCTGTTCGGAACTGTGGAGAAGTTTGTCACTGGAAGTGTGTGAAGGAAAAGTTTAAATTCTCGAAAGGGATGAA ATTCAAGTGCCATCAGCATGCATGCTTTAAATGCAAGCAGAAACGGATATTGAGGTGTGTAAGATGCTCGATTGCTTTCCATGATAAATGTGCACCATGG CCTGCAATCCATTTGACGAACCAACCGGGGCGAGCAATTTGCTGGAGGCATGATGATGATTGGAGACTGGATAAGGTCCATGACGGTTGGAGACTGGATA AGGAGATATTCCTTCAATTGCCTCTACCTTATGTTGAGGAAGAGTTCAAGATTGATTTAACGTGGAAAGGCCTGATGGAGAACAAACTTGAGCCCCCTCC TTATGTGCACATCAGGCGCATGTCCAAATTATTTTCAGTTATCTTTGTAAGGTCTCTAGACTTCGAGTTTTCTTGTTCTACTTCTTGGCAACATGAACGC AGTTCTCCACTGGAACTTTTAAGGGTCCAATATATAAGCTGCTCCAAGTCTTGCCACTGTTCTGAAAACTGCACAAACAGGCCATTTCGCAAGGATAAAA AGATAAGAATTGTTAAGGTGAGCATTGAACTGACAGAACTCTGTGGTTGGGGCGTAGAAGCAGCCAAACCGATAAATAAAGGCGACTTTGTCATAGAGTA CATAGGGGAAGCCATTCTGGGATTCAAGCTTACGAACAGCCATTCTGGGCAAGTCGAGGGGGAGACGAGAGTTGGTGTGTTTGCTGCTCAATCCATAGAA GTGGGAGAGCCTTTGACATATGATTACAGATTTGTGCAGTTTGGACCAGAAGTCAAGTGCTACTGTCGGGCAGCAAAATGTCAGGGTTACCTTGGAACCA AAAGGAAGGTGACTGCGGAGTTGAATATAGAGATGAACATATACTGGGGTGCTAAACGCAGGAGATCATCATCCATGCCTTGTTTAGCCATTGTTGCCTT GTGA
AA sequence Show only first row Show all	>Lus10006888 pacid=23156373 polypeptide=Lus10006888 locus=Lus10006888.g ID=Lus10006888.BGIv1.0 annot-version=v1.0 MPDFGNATLHCSTLKNLPSPHAPPPSPPPPPPDGELEGNNSPVKALVNGCNWNLNLRLQNGKNRCNRDLIRVLSRCRGGLSSKKSCGARCLKDYVNDWVR QKVEMGASSSQCYLPFLAGGKKMVECLVCHRCIDPEEELASCSVRNCGEVCHWKCVKEKFKFSKGMKFKCHQHACFKCKQKRILRCVRCSIAFHDKCAPW PAIHLTNQPGRAICWRHDDDWRLDKVHDGWRLDKEIFLQLPLPYVEEEFKIDLTWKGLMENKLEPPPYVHIRRMSKLFSVIFVRSLDFEFSCSTSWQHER SSPLELLRVQYISCSKSCHCSENCTNRPFRKDKKIRIVKVSIELTELCGWGVEAAKPINKGDFVIEYIGEAILGFKLTNSHSGQVEGETRVGVFAAQSIE VGEPLTYDYRFVQFGPEVKCYCRAAKCQGYLGTKRKVTAELNIEMNIYWGAKRRRSSSMPCLAIVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	0	1
AT1G77600			ARM repeat superfamily protein...		Lus10025655 [exp]	2.0	0.9624
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	2.6	0.9628
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	5.7	0.9616
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	5.9	0.9465
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	8.9	0.9456
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	9.5	0.9377
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	10.2	0.9534
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	10.7	0.9514
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	11.0	0.9519
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	13.8	0.9402

Compare expression of checked genes

Lus10006888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.