Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05440 396 / 1e-138 EDA35 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027954 [exp] 600 / 0 AT4G05440 419 / 1e-147 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Lus10000812 [exp] 174 / 2e-54 AT4G05440 133 / 7e-39 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Lus10027955 [exp] 167 / 9e-52 AT4G05440 132 / 6e-39 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112300 [exp] 442 / 9e-157 AT4G05440 390 / 3e-136 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Potri.017G048600 [exp] 435 / 2e-153 AT4G05440 404 / 6e-141 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Potri.017G049500 [exp] 65 / 4e-13 AT4G05440 63 / 1e-13 embryo sac development arrest 35, temperature sensing protein-related (.1.2) Potri.006G050600 [exp] 0 / 1 AT4G05440 0 / 1 embryo sac development arrest 35, temperature sensing protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF07065 [flax] [poplar] D123 D123
Representative CDS sequence Show only first row Show all	>Lus10006898 pacid=23142123 polypeptide=Lus10006898 locus=Lus10006898.g ID=Lus10006898.BGIv1.0 annot-version=v1.0 ATGAAGGTGGTGGAAGTGAACCGATGTCAGATCCAAGAGTGGTACCCAAAGTTCAAGTCTTCCTCAATTCCAACTATGATTCATCAGCTTCCAGAATCTT TTATTGACTACCTACTTGACTCTGGAACACTGCAACTTCCTGTATCCGTTGAGGACGAAGATGCACTGCCAAATAGAGTCCATAATCCCGTAGATGAAGA GGATTATCAAGTAACAGAAGAAGGATCCGATGATGAGGCTGAAGAAACACCCCCTTCTTTTCCCGTATTGGAGCTGAAGATTAAAAAATCAATAAAAGAC CTTGAAGGAGAAGTTTTTCCTAAGCTGAACTGGAGTGCACCAAAGGACTCTGCTTGGATTAGTGTATCAAGAACCTTGCGTTGCACTTCATTCAGTGAGA TCGCACTCCTATTCAAGTCATCTGACTCATTGGTGCATGATTTGAGTCACGCCTATGATTCATGTTCCGACAAATCATCATCAAGACCCTTGAATTTCTA CCTTGCACTCAGGAGCTGGTATCCTTCATTACTGCCGGAGAGGGAGTTTCGGTGCTTTGTACGTGATCATCACCTAGTCGGAATCTCACAACGCGAAGTT ACTACATGCTATCCTTTGATCCTTGCAGAGAGAAGAAGTATAAAAAATCTGATTAGGGAATTCTTCGACAAGAAGGTAAAGCTGCAGTTCGAATCAGACA ATTACACACTTGATGTCTACGTGACCGACGACGGGCGTGTTAAGATTATCGATTTTAACCCTTGGAGTGCATTTACACTTCCACTGCTCTTTACGTGGGA GGAACTCGAGCAAGTTACAGGGGAAGAGCTAGATGATGATGATGATGGTGTGGAGTTGAGAGTTGTGGAGACTCGGTGTGGAATTCGGACCGGGTTGAAA ACAGCAGTTCCACAGGAGTTCCTCGACGCTGGCCCAGGGAGTGGATGGGAGCAGGTATTGAAGAACGCATTTGAGGAGCAGCAGCAGAACGCACAAGTAT CGGACAATGTTTGA
AA sequence Show only first row Show all	>Lus10006898 pacid=23142123 polypeptide=Lus10006898 locus=Lus10006898.g ID=Lus10006898.BGIv1.0 annot-version=v1.0 MKVVEVNRCQIQEWYPKFKSSSIPTMIHQLPESFIDYLLDSGTLQLPVSVEDEDALPNRVHNPVDEEDYQVTEEGSDDEAEETPPSFPVLELKIKKSIKD LEGEVFPKLNWSAPKDSAWISVSRTLRCTSFSEIALLFKSSDSLVHDLSHAYDSCSDKSSSRPLNFYLALRSWYPSLLPEREFRCFVRDHHLVGISQREV TTCYPLILAERRSIKNLIREFFDKKVKLQFESDNYTLDVYVTDDGRVKIIDFNPWSAFTLPLLFTWEELEQVTGEELDDDDDGVELRVVETRCGIRTGLK TAVPQEFLDAGPGSGWEQVLKNAFEEQQQNAQVSDNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	0	1
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10035702 [exp]	1.4	0.7006
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	4.9	0.6610
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10042019 [exp]	4.9	0.6237
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	9.6	0.6754
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	13.0	0.5867
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	14.0	0.5816
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	15.7	0.6290
AT1G77310			unknown protein		Lus10028666 [exp]	21.2	0.5400
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	22.4	0.6283
AT2G47830			Cation efflux family protein (...		Lus10009817 [exp]	25.5	0.6272

Compare expression of checked genes

Lus10006898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.