Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63250 407 / 2e-144 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G22740 367 / 1e-127 HMT3 homocysteine S-methyltransferase 3 (.1) AT3G25900 293 / 5e-99 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014686 [exp] 544 / 0 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10039356 [exp] 382 / 1e-133 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10006602 [exp] 326 / 4e-112 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10041451 [exp] 284 / 6e-95 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10034320 [exp] 281 / 5e-94 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G049800 [exp] 440 / 1e-156 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.005G213100 [exp] 437 / 1e-155 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G083600 [exp] 391 / 3e-137 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.008G155900 [exp] 380 / 8e-133 AT3G22740 485 / 2e-173 homocysteine S-methyltransferase 3 (.1) Potri.010G125200 [exp] 278 / 6e-93 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [flax] [poplar] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006901 pacid=23142112 polypeptide=Lus10006901 locus=Lus10006901.g ID=Lus10006901.BGIv1.0 annot-version=v1.0 ATGATGAGTATTTTGGTACATGTTGACTATCTTGAAGCTGGTGCAGATATTATCATCACAGCATCTTATCAGGCTACCATTCAGGGTTTCGAGGCAAAGG GGTACTCTACAGAAGTAAGTGAAAGCATGCTTAGGAAGAGCGTGGAAATTGCTTGTGAGGCAAGGGAAACTTATAACAAAAGATGCCAGGAAGCTCAACA TGACACCGACAGTAGTGGCAAAATCTTGAAGCAGCGGCCCATAATAGTTGCTGCTTCTGTTGGCAGCTACGGAGCTTATTTAGCTGATGGATCAGAGTAC AGTGGGATCTATGGTGATACTGTAAACTTAGACACCCTGAAGGAGTTCCATCGCAGAAGGCTTCAAATCTTGGCAGAGGCTGGCCCTGATCTCATAGCAT TCGAAACCATTCCTAATAAGGTGGAAGCTCAGGCTTATGCTGAGCTTTTAGAGGAAGAAGGCGTAGATATTCCCGCATGGTTTGCTTTTAACTCGAAGGA CGGTGTGAATGTTGTTAGTGGTGACTCATGGATTGAATGTGCCACTATTGCTGAGAGATGCAAGAGAGTGGTGGCTGTAGGGCTCAATTGCACCCCTCCT AGGTTCATTCATGGTTTAATATCAGCCATTAAAAAGGTGACCACCAAACCAATCCTGATATACCCGAACAGCGGAGAGTGCTATGATGCTGACATTAAGG AGTGGGTGCAAAATACAGGGGTAACTGATGAAGATTTCATCTCATACGTAAACAAGTGGTGCGATGCCGGGGCTAGCCTTGTCGGAGGCTGCTGTAGAAC TACTCCTAATACGATCCGAGCCATTTACAGGACCCTTTCCAGCAGATCAACTGCTTCACCGCTGTAG
AA sequence Show only first row Show all	>Lus10006901 pacid=23142112 polypeptide=Lus10006901 locus=Lus10006901.g ID=Lus10006901.BGIv1.0 annot-version=v1.0 MMSILVHVDYLEAGADIIITASYQATIQGFEAKGYSTEVSESMLRKSVEIACEARETYNKRCQEAQHDTDSSGKILKQRPIIVAASVGSYGAYLADGSEY SGIYGDTVNLDTLKEFHRRRLQILAEAGPDLIAFETIPNKVEAQAYAELLEEEGVDIPAWFAFNSKDGVNVVSGDSWIECATIAERCKRVVAVGLNCTPP RFIHGLISAIKKVTTKPILIYPNSGECYDADIKEWVQNTGVTDEDFISYVNKWCDAGASLVGGCCRTTPNTIRAIYRTLSSRSTASPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	0	1
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10022040 [exp]	2.4	0.9566
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	4.7	0.9510
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	6.0	0.9508
AT2G40800			unknown protein		Lus10030504 [exp]	6.6	0.9477
AT5G42960			unknown protein		Lus10007162 [exp]	9.5	0.9400
AT5G54970			unknown protein		Lus10032643 [exp]	10.0	0.9421
AT4G15080			DHHC-type zinc finger family p...		Lus10039043 [exp]	11.5	0.9359
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	14.7	0.9438
AT3G54470			uridine 5'-monophosphate synth...		Lus10024166 [exp]	16.0	0.9425
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	16.7	0.9283

Compare expression of checked genes

Lus10006901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.