Plant FIBer expression Database

Lus10006902 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G04614 114 / 2e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014685
[exp]
179 / 2e-56 AT4G04614 64 / 2e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G213000
[exp]
152 / 2e-47 AT4G04614 139 / 3e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10006902 pacid=23142115 polypeptide=Lus10006902 locus=Lus10006902.g ID=Lus10006902.BGIv1.0 annot-version=v1.0
ATGAAAAGGGGGATTCCATGGAGTGACGATGAAGGTAAAGGGTCGTCAGATTCCGACGATGAATCGTCGTCCTCGTCGGCATCGGATTCTGAGAATGAGA
TTGCCAAAACCAAGACGAAATCCAAGAACGTATCTAGAGGCAAGGCTGCAAAGCGTAGGGGTGGAGTTGTGGACTTTGAGGACCTAAGGCGACATGGATA
CAAAGGTGCACCATCAGTCCTGAGAATGCCACCACCTAAAGACGACACTGAGCCGAACTGGACCTGGTCGACAGGGAAAGAGCGCAAGGACCCTAAGGAG
AAGGACGAAGAAGAGTCTTTTGAAGCGCGGCAGAAAACAAGGGCTGCTCTAATGGCCGGAGAACAGCTAGTGCATGCTCAGACACGGAAGGAGAAAGAAC
AGTTGTCTTTCTCTCAGAAGGAGAAGAGGAAACGAGACCTTGGTCAAGCCAGCAGGGGGAAGAGTTACGTCGAGGAAGAGAAGAGGCTGTTGCGAGAGAA
TGGCGTCTATTCTGGGTTCGATACATAA
AA sequence
>Lus10006902 pacid=23142115 polypeptide=Lus10006902 locus=Lus10006902.g ID=Lus10006902.BGIv1.0 annot-version=v1.0
MKRGIPWSDDEGKGSSDSDDESSSSSASDSENEIAKTKTKSKNVSRGKAAKRRGGVVDFEDLRRHGYKGAPSVLRMPPPKDDTEPNWTWSTGKERKDPKE
KDEEESFEARQKTRAALMAGEQLVHAQTRKEKEQLSFSQKEKRKRDLGQASRGKSYVEEEKRLLRENGVYSGFDT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G04614 unknown protein Lus10006902
[exp]
0 1
AT1G29850 double-stranded DNA-binding fa... Lus10004540
[exp]
1.7 0.8706
AT1G19800 ABCI14, TGD1 ATP-binding cassette I14, trig... Lus10002636
[exp]
4.5 0.8412
AT1G11760 MED32 unknown protein Lus10034758
[exp]
4.7 0.8488
AT5G06240 EMB2735 embryo defective 2735 (.1) Lus10021327
[exp]
4.9 0.8096
AT4G28440 Nucleic acid-binding, OB-fold-... Lus10013989
[exp]
5.2 0.8419
AT5G49060 Heat shock protein DnaJ, N-ter... Lus10006515
[exp]
5.5 0.8219
AT5G01600 ATFER1 ARABIDOPSIS THALIANA FERRETIN ... Lus10012233
[exp]
6.9 0.7981
AT1G02290 unknown protein Lus10018907
[exp]
8.8 0.8057
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Lus10041104
[exp]
10.9 0.7297
AT5G63905 unknown protein Lus10007744
[exp]
11.4 0.7932

Lus10006902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.