Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26110 382 / 4e-136 Protein kinase superfamily protein (.1.2) AT3G50530 44 / 8e-05 CRK CDPK-related kinase (.1.2) AT2G31500 41 / 0.0006 CPK24 calcium-dependent protein kinase 24 (.1) AT1G08120 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014684 [exp] 428 / 1e-146 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10025154 [exp] 44 / 6e-05 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10035764 [exp] 44 / 8e-05 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10025236 [exp] 43 / 0.0002 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1) Lus10017631 [exp] 42 / 0.0004 AT5G37790 601 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G212800 [exp] 383 / 1e-136 AT5G26110 401 / 4e-144 Protein kinase superfamily protein (.1.2) Potri.002G049900 [exp] 383 / 2e-136 AT5G26110 405 / 9e-146 Protein kinase superfamily protein (.1.2) Potri.010G249300 [exp] 45 / 2e-05 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G009800 [exp] 45 / 3e-05 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006903 pacid=23142104 polypeptide=Lus10006903 locus=Lus10006903.g ID=Lus10006903.BGIv1.0 annot-version=v1.0 ATGGATATTGAGGAAGGTGTCAGAGATGGCTCCCTGGTTCTTATAAAGCAAGGAGCTGAAGCTAGGGTGTTTGAGTCGAATTTTGTGGGAAGGAGGTGCG TCATTAAGGAAAGGTTCTCGAAAAAGTATAGGCATCCAACTTTGGATGCTAAGCTCACTCTCAAACGATTGAATGCTGAAGCCAGATGCATGACAAAAGC AAGACGACTTGGAGTTTCCACTCCCGTTCTTTACGCTGTGGATACTGTATTGCATTCTTTAACATTCGATTTTGTTGATGGTGCTGCTGTGAAAGATGTC CTCCTCGAGTTCGGGTCAAAGGGAGTTGTGGAAGAAAGACTGGATGATATTGCTGTGCAGATTGGTGATGCAATTGCTAACCTACATGATGGTGGGCTTA TCCATGGAGATCTCACAACCTCAAACATGCTGATCAGGAACGGTACCAATCAATTGGTGCTCATTGATTTCGGTCTAAGCTTTACATCAACCCTTCCAGA GGACAAAGCTGTTGATCTTTATGTGCTCGAGCGAGCATTGCTCTCAATGCATTCCTCATGCGGTAACGTGATGGACCGGATACTTGGTGCATATAGGAAG TCTTCAAAGCAGTGGTCAGCTACGTTCAACAAGCTAGCTCAAGCCACCTGCTGCAGTTCGACAACGGGGACGAAAGCGCACCATGGTTGGATAAAGCTCC AAACCATTATCAGCTATGCACTCTGTACAAGTGGTTAA
AA sequence Show only first row Show all	>Lus10006903 pacid=23142104 polypeptide=Lus10006903 locus=Lus10006903.g ID=Lus10006903.BGIv1.0 annot-version=v1.0 MDIEEGVRDGSLVLIKQGAEARVFESNFVGRRCVIKERFSKKYRHPTLDAKLTLKRLNAEARCMTKARRLGVSTPVLYAVDTVLHSLTFDFVDGAAVKDV LLEFGSKGVVEERLDDIAVQIGDAIANLHDGGLIHGDLTTSNMLIRNGTNQLVLIDFGLSFTSTLPEDKAVDLYVLERALLSMHSSCGNVMDRILGAYRK SSKQWSATFNKLAQATCCSSTTGTKAHHGWIKLQTIISYALCTSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26110			Protein kinase superfamily pro...		Lus10006903 [exp]	0	1
AT4G24830			arginosuccinate synthase famil...		Lus10033978 [exp]	3.6	0.7851
AT1G12650			unknown protein		Lus10024493 [exp]	7.9	0.7693
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	10.1	0.7630
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	15.5	0.7497
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	18.6	0.7559
AT2G04865			Aminotransferase-like, plant m...		Lus10012346 [exp]	21.9	0.6879
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10024229 [exp]	23.0	0.7207
AT1G71430			unknown protein		Lus10040114 [exp]	27.2	0.7367
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	27.5	0.7084
AT1G71150			unknown protein		Lus10034613 [exp]	29.9	0.6482

Compare expression of checked genes

Lus10006903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.