Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63240 659 / 0 DNAse I-like superfamily protein (.1) AT2G32010 629 / 0 CVL1 CVP2 like 1 (.1.2) AT1G05470 614 / 0 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G04980 314 / 2e-101 DNAse I-like superfamily protein (.1.2) AT5G65090 312 / 2e-100 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G37440 310 / 2e-100 DNAse I-like superfamily protein (.1.2) AT4G18010 272 / 3e-83 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G01900 259 / 8e-81 DNAse I-like superfamily protein (.1) AT1G71710 261 / 6e-79 DNAse I-like superfamily protein (.1.2) AT1G34120 256 / 2e-77 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014684 [exp] 917 / 0 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10042619 [exp] 644 / 0 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 635 / 0 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10006597 [exp] 435 / 2e-149 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10033398 [exp] 390 / 1e-129 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 388 / 2e-129 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 366 / 5e-121 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10040107 [exp] 340 / 3e-106 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10025305 [exp] 323 / 9e-104 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G050000 [exp] 758 / 0 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 742 / 0 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 672 / 0 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G155700 [exp] 669 / 0 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.010G247800 [exp] 397 / 8e-133 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 389 / 5e-130 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 318 / 1e-101 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 317 / 3e-101 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 285 / 9e-88 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.012G041600 [exp] 274 / 8e-86 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10006904 pacid=23142117 polypeptide=Lus10006904 locus=Lus10006904.g ID=Lus10006904.BGIv1.0 annot-version=v1.0 ATGAAGCTTTCGTGGCCCAAGACATTGGTCAAGAAGTGGTTTAACATCAAGAGCAAAGCTGAAGAATTCCAGGCAGATGATACTAGCTACTGTTATGGAG GAGGAGATGTACAAGGAGATCAAGGTTGCTGTGATGAAGATTGGAGAAGCAACTTCACAGGGAGAGAGGCAGCAGCATGCAGCATCAAGAAAAGCAAAAC AGAGAGGTTGAGTAAGAGAAGCTCTGATAGAGTCAGACGAAGTAAAATTGATATGGATGCTGCTCATGTCACAGAGGTTAACAATTATAGGGTTTTTGTT GCCACTTGGAATGTGGCTGGAAAATCTCCTCCAAGTCACTTGAGCCTTGAAGACTGGCTTCACACTTCACCTCCCGCTGACATTTATGTCCTTGGATTCC AAGAAATCGTTCCTCTAAACGCCGGCAACGTTCTGGGCACAGAGGACAACGGTCCGGCGAGAAAATGGCTATCTCTAATTCGAAATACACTCAACACACT TCCCGGGGGCGGCATCACCGGTGCTTGCCGCACTCCTTCTCCGATTCCTGATCCGCTTGTAGAGTCGGACGCCGATTTCGAAGCTTCGGAAACCAGACAA AACGTTTCGTCATTTTTCCTCCGCCGTTCGTTCCAGTCGTTGAGCCGGAGCATGAGGATGGATGACGGTGGAGGCGAAATGACTCAAACACAGTCAAGGT TGGACCGGCGGTTCAGTGTCTGTGAGGACAGAACAATGATGTTTGGGCAGAGGAGCAACGATTATTACGAGCCGAGTTTCGTGCATGGTGGTTACTCATC GGACGATGAGAGTTCCCCTGTTACGGCTCATTGTTCGCCGGTTGATCCGTCAATGGGAACGGAAGAGAGGGAGGGGGGAAGTTATGGGCGTCAGTCAAGG TACTGTTTGGTGGCTAGCAAGCAGATGGTTGGGATTTTCTTAACGGTTTGGGTTAGGAGCAACCTTAAAGATGATGTGAAGAACATGAAGGTGTCTTGCG TTGGCAGAGGATTGATGGGTTATCTAGGCAACAAGGGATCCATTTCAATTAGCATGTCATTGCAGCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGAC TTCCGGGCAAAAGGAGGGGGATGAGCTAAGGAGGAACTCTGATGTCATGGAGATTCTCAGGAAGACTAGGTTTCCTAGAGTCCATGATGGATATGAGAAT TCTCCCCAGACAATCCTAGACCATGATCGGGTTATATGGCTAGGAGACTTGAACTATCGAATTGCATTGTCGTATCGGTCGGTAAAGGCCCTCGTAGATA TGTGCAACTGGAGGTTATTGCTAGAGAATGATCAGGCATGTTTCCTTACTCTCCGGATAGAGAAGAGGTTAGGGAGAGTGTTTGAAGGATGGCATGAGGG TAGAATATACTTCCCTCCAACGTACAAATACTCTAATAATTCAGACAGATACGCTGGAGACGACCAACATCTGAAGGAAAAGAGAAGAACTCCTGCCTGG TGTGACCGGATTCTTTGGTATGGAAGAGGCTTGAATCAGTTATCATACGTGCGTGGCGAATCGAGGTTCTCGGATCACAGGCCAGTGTACAGCATATTTT CGGCTGAGGTGGAGTCGATAAACCGTAGCAGAATGAAGAAGAGTATGAGCTGTTCTAGTAGCTCCAGAGTTGAGGTAGAAGAGCTGCTTCCTTACTCACA CGGATACTCCTACACTCAACTCAATTACTTTTGA
AA sequence Show only first row Show all	>Lus10006904 pacid=23142117 polypeptide=Lus10006904 locus=Lus10006904.g ID=Lus10006904.BGIv1.0 annot-version=v1.0 MKLSWPKTLVKKWFNIKSKAEEFQADDTSYCYGGGDVQGDQGCCDEDWRSNFTGREAAACSIKKSKTERLSKRSSDRVRRSKIDMDAAHVTEVNNYRVFV ATWNVAGKSPPSHLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLSLIRNTLNTLPGGGITGACRTPSPIPDPLVESDADFEASETRQ NVSSFFLRRSFQSLSRSMRMDDGGGEMTQTQSRLDRRFSVCEDRTMMFGQRSNDYYEPSFVHGGYSSDDESSPVTAHCSPVDPSMGTEEREGGSYGRQSR YCLVASKQMVGIFLTVWVRSNLKDDVKNMKVSCVGRGLMGYLGNKGSISISMSLQQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVHDGYEN SPQTILDHDRVIWLGDLNYRIALSYRSVKALVDMCNWRLLLENDQACFLTLRIEKRLGRVFEGWHEGRIYFPPTYKYSNNSDRYAGDDQHLKEKRRTPAW CDRILWYGRGLNQLSYVRGESRFSDHRPVYSIFSAEVESINRSRMKKSMSCSSSSRVEVEELLPYSHGYSYTQLNYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	0	1
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	1.4	0.9133
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	2.2	0.8947
AT3G60660			unknown protein		Lus10010359 [exp]	2.8	0.9129
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	4.5	0.8832
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10001197 [exp]	10.4	0.9039
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	16.7	0.8995
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	17.1	0.8865
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	17.7	0.8702
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	18.1	0.8099
AT5G03670			unknown protein		Lus10035565 [exp]	18.5	0.8825

Compare expression of checked genes

Lus10006904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.