Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23535 280 / 2e-98 KOW domain-containing protein (.1) AT5G54600 66 / 1e-13 Translation protein SH3-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042614 [exp] 300 / 2e-106 AT5G23535 286 / 6e-101 KOW domain-containing protein (.1) Lus10022069 [exp] 298 / 2e-105 AT5G23535 284 / 5e-100 KOW domain-containing protein (.1) Lus10014683 [exp] 164 / 3e-50 AT2G48140 145 / 6e-43 embryo sac development arrest 4, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10005180 [exp] 71 / 2e-15 AT5G54600 246 / 3e-83 Translation protein SH3-like family protein (.1.2) Lus10038125 [exp] 71 / 3e-15 AT5G54600 246 / 6e-83 Translation protein SH3-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062600 [exp] 295 / 2e-104 AT5G23535 254 / 6e-88 KOW domain-containing protein (.1) Potri.001G415400 [exp] 66 / 6e-14 AT5G54600 243 / 2e-82 Translation protein SH3-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10006905 pacid=23142091 polypeptide=Lus10006905 locus=Lus10006905.g ID=Lus10006905.BGIv1.0 annot-version=v1.0 ATGGGTTGGAAGGCAGCTGAAAAGCTAATCAGACACTGGAAAATACTCAGAGGAGATAATGTGAGAATGCTGCTGGGCAAGGATAAAGGCGAGACTGGTG TCGTCAAACGTGTGGTTCGCTCTCAGAATCGTGTTATTGTTGAGGGCAAAAATCTGGTTAAAAAGCATATAAAAGCAGGTGAAGGTCACGAAGGAGGAAT TTTTACAGTTGAAGCTCCACTCCATGCCTCAAATGTCCAAGTTGTTGATCCAGTCACAGGGAGGCCTTGCAAGGTGGGGATCAAGTATCTTGAGGATGGT ACCAAAGTAAGAGTTTCAAGAGGTATCGGAGCATCTGGATCCATCATTCCGCGTCCGGAGATTCTGAAAGTAAGAACGACACCAAGGCCTACCGTAGCCG GTCCGAAGGATACTCCGATGGACGTGGTGCTGGAAAAGACATACGACTCTAAAACAGGGAAGGGCATGCCTCATCTTTGA
AA sequence Show only first row Show all	>Lus10006905 pacid=23142091 polypeptide=Lus10006905 locus=Lus10006905.g ID=Lus10006905.BGIv1.0 annot-version=v1.0 MGWKAAEKLIRHWKILRGDNVRMLLGKDKGETGVVKRVVRSQNRVIVEGKNLVKKHIKAGEGHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGIKYLEDG TKVRVSRGIGASGSIIPRPEILKVRTTPRPTVAGPKDTPMDVVLEKTYDSKTGKGMPHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23535			KOW domain-containing protein ...		Lus10006905 [exp]	0	1
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10020599 [exp]	10.5	0.7937
AT3G16780			Ribosomal protein L19e family ...		Lus10037707 [exp]	16.2	0.8244
AT3G53740			Ribosomal protein L36e family ...		Lus10016466 [exp]	18.1	0.8215
AT5G41685			Mitochondrial outer membrane t...		Lus10040758 [exp]	23.0	0.8093
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10035500 [exp]	39.8	0.7610
AT1G07770		RPS15A	ribosomal protein S15A (.1.2)		Lus10032503 [exp]	44.5	0.7982
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	53.2	0.7689
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10016453 [exp]	59.3	0.7767
AT5G41685			Mitochondrial outer membrane t...		Lus10000059 [exp]	66.0	0.7659
AT1G26880			Ribosomal protein L34e superfa...		Lus10012829 [exp]	78.9	0.7785

Compare expression of checked genes

Lus10006905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.