Plant FIBer expression Database

Lus10006911 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02715 91 / 7e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014679
[exp]
300 / 2e-104 AT4G02715 115 / 1e-31 unknown protein
Lus10022059
[exp]
171 / 9e-54 AT4G02715 151 / 4e-46 unknown protein
Lus10042605
[exp]
162 / 3e-50 AT4G02715 154 / 4e-47 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G211400
[exp]
123 / 5e-35 AT4G02715 105 / 4e-28 unknown protein
Potri.002G050900
[exp]
106 / 1e-28 AT4G02715 96 / 1e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10006911 pacid=23142098 polypeptide=Lus10006911 locus=Lus10006911.g ID=Lus10006911.BGIv1.0 annot-version=v1.0
ATGGAGACGCTTGTAGTTTCAGCTGCTCACCACAGGAATCACTATTATTCAGGCAGGATTAAGCCACATGCTTCCTCTGGCCGTAGGCAATTTAGAGGGA
TCGATTGCCGCACTTTCCAATATGGACCTGGAATACTCCCTATCCCTTTCAAAACCCCCTCTAGGAAACCCAACACTCCTGACTCACCTTTTTCTTCAGC
TAATTCACCTTCACATTTCGCTCCGAGGAGCTCCCCTATTCCGATCAGCAAGAAAGAGCCCAGAAAGTTGTGTACTTCGAGTGATGGCATCATGTTAACA
CCACCAGATGAGGACTCTTGTTTCTCTGAGCTATGGGCTGGCCCTGCTTATTCGAATTCCCCACCGCCTAGTTCTTTGCCGATTCCTAACTTCTCAATGA
AGCCAAAACGAGCTGTGTCTCTGGAGTTACCTCTCCCGGATACTGACATTCAGTTGGACCTAGTTTCCAAGTCTGCTCCTGCTTCCCCTTCGAGGGAGGA
GTATAAGTATAACTTACCTGCAGCGAGTGACATGTTATGCACAGCTGACTTTGCGACCAAGATTCTCCGGCGCATCCTCAACATTGATCAAGGAGATGAT
TGA
AA sequence
>Lus10006911 pacid=23142098 polypeptide=Lus10006911 locus=Lus10006911.g ID=Lus10006911.BGIv1.0 annot-version=v1.0
METLVVSAAHHRNHYYSGRIKPHASSGRRQFRGIDCRTFQYGPGILPIPFKTPSRKPNTPDSPFSSANSPSHFAPRSSPIPISKKEPRKLCTSSDGIMLT
PPDEDSCFSELWAGPAYSNSPPPSSLPIPNFSMKPKRAVSLELPLPDTDIQLDLVSKSAPASPSREEYKYNLPAASDMLCTADFATKILRRILNIDQGDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02715 unknown protein Lus10006911
[exp]
0 1
AT1G60995 unknown protein Lus10014638
[exp]
2.2 0.9227
AT3G19770 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR ... Lus10035376
[exp]
5.3 0.9066
AT5G63280 C2H2ZnF C2H2-like zinc finger protein ... Lus10014794
[exp]
5.7 0.9096
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Lus10036878
[exp]
6.3 0.9160
AT4G14340 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casei... Lus10021175
[exp]
11.0 0.9012
AT1G73670 ATMPK15 MAP kinase 15 (.1) Lus10034601
[exp]
21.9 0.8931
AT3G49640 Aldolase-type TIM barrel famil... Lus10003486
[exp]
22.0 0.9058
AT2G26000 BRIZ2 BRAP2 RING ZnF UBP domain-cont... Lus10035023
[exp]
22.7 0.9054
AT5G55100 SWAP (Suppressor-of-White-APri... Lus10032646
[exp]
23.8 0.9039
AT3G54440 glycoside hydrolase family 2 p... Lus10024155
[exp]
25.3 0.9014

Lus10006911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.