Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05420 70 / 1e-14 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT4G14860 64 / 1e-12 OFP ATOFP11 ovate family protein 11 (.1) AT2G32100 65 / 2e-12 OFP ATOFP16, OFP16 RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, ovate family protein 16 (.1) AT1G79960 55 / 7e-09 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT2G36050 46 / 7e-06 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1) AT5G04820 44 / 2e-05 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014677 [exp] 249 / 3e-84 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10006120 [exp] 96 / 3e-23 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10010554 [exp] 88 / 3e-21 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10016979 [exp] 48 / 2e-06 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10034150 [exp] 47 / 2e-06 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10035891 [exp] 48 / 3e-06 AT1G79960 166 / 2e-48 ovate family protein 14 (.1) Lus10043433 [exp] 47 / 4e-06 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 47 / 4e-06 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G211300 [exp] 105 / 1e-27 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.008G153500 [exp] 94 / 1e-23 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.010G087200 [exp] 95 / 2e-23 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.002G051200 [exp] 92 / 2e-22 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.001G180400 [exp] 68 / 1e-13 AT1G79960 137 / 2e-38 ovate family protein 14 (.1) Potri.016G072900 [exp] 48 / 2e-06 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 48 / 2e-06 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.008G017500 [exp] 47 / 3e-06 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 45 / 1e-05 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10006912 pacid=23142100 polypeptide=Lus10006912 locus=Lus10006912.g ID=Lus10006912.BGIv1.0 annot-version=v1.0 ATGCCTAAAGCACTGGGCAGAAACCTCCACAGCTGCTTCAGCGTCGTCGTCACAAAACGTCCCAGCCTCCTCCCGCCGCCATCACCACATCATCATCACC ATCATCATAACAGCCGTTCAAATCTCTTCCAAAGCTACAACTCCCTCTATGAGGAATCCTCTGCCGACAACCTCTCCGGCCCTCCATCTCCGCCGCCGCT TCTCTCCTCGTCGGAGCCTGACTTCGCCACCGTCTTCGCCTCCGACAGATTCTTCTTCTCATCCCCCGGCCGGTCCAACTCCATCGTCGACTCTTCCTCA GGCGGCTCCAGCGCCGACCAGGAACTGCTTCCTCCGGGGAGGGGAATAGCTGTCCCCACATACTCGCCGGACCCGTACAGGGACTTCAGGCAGTCCATGC AGGAGATGGTGGATGCGACACGTGCCAGAGGGGGATTGGTCGACGTGGGGTCCAGCTGGAACTACTTGCACGAACTTCTGCTGTCCTACCTGGCGCTCAA CCCGAAGAGCACCCACAAGTTCATCGTCTACGCCTTCGCCGACCTCCTCGTCACCCTCCTGTCCTCATCTGAAACGCGCGGCGGAGGCGCGTTGATTGAA CGCGGTCCTCCTGGGTGTGGCGGGAATAAGGTGAAGCTCACGTAG
AA sequence Show only first row Show all	>Lus10006912 pacid=23142100 polypeptide=Lus10006912 locus=Lus10006912.g ID=Lus10006912.BGIv1.0 annot-version=v1.0 MPKALGRNLHSCFSVVVTKRPSLLPPPSPHHHHHHHNSRSNLFQSYNSLYEESSADNLSGPPSPPPLLSSSEPDFATVFASDRFFFSSPGRSNSIVDSSS GGSSADQELLPPGRGIAVPTYSPDPYRDFRQSMQEMVDATRARGGLVDVGSSWNYLHELLLSYLALNPKSTHKFIVYAFADLLVTLLSSSETRGGGALIE RGPPGCGGNKVKLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006912 [exp]	0	1
AT3G12150			unknown protein		Lus10027799 [exp]	28.2	0.7567
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	29.6	0.7783
AT4G36750			Quinone reductase family prote...		Lus10026035 [exp]	42.6	0.7827
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	47.3	0.7482
AT1G71970			unknown protein		Lus10009418 [exp]	48.6	0.7772
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	55.7	0.7548
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	86.9	0.7321
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	89.3	0.7629
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Lus10019376 [exp]	92.4	0.7427
AT4G24830			arginosuccinate synthase famil...		Lus10013207 [exp]	156.0	0.7255

Compare expression of checked genes

Lus10006912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.