Plant FIBer expression Database

Lus10006915 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02725 160 / 1e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014675
[exp]
286 / 5e-100 AT4G02725 154 / 4e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G210700
[exp]
194 / 1e-63 AT4G02725 152 / 2e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10006915 pacid=23142110 polypeptide=Lus10006915 locus=Lus10006915.g ID=Lus10006915.BGIv1.0 annot-version=v1.0
ATGGCAACTCTATCGCCATTCTTGCTTTCCCCCTTAGCTTCAATCGCAAATGCTCGCAGTTGCTGCCGCTCATCTTCAAGTACGACCCAAAGATGGCCGA
CGTTCTCTTTGACGAAGACCCTGAAACCCAGCAGAAGCAGAACTGTAGTCGTCCATGGCGGGAGAATTAATTCAGGCGACTCACGGCCAGATGGGGCTCA
ATTCATCGATGAAGACGGCGTGGTTGAAGACATGGATGGCTACATGAACTATCTCTCTCTAGAATATGACTCCGTCTGGGACACCAAACCATCCTGGTGC
CAACCCTGGACGATAGCTCTAACGGGAGTGTTGATGATCAGTGGTAGCTGGTTGGTTTTGCAGTCAGTTGCAGTCACCGCAATTGTTGTCTTGTTAGTAT
CTGCTTGGTGGTACATTTTCCTCTACTCTTATCCCAGGGAATACTCGAATATGATTGCTGAACGGCGAAAGAGGGTGACGAGTGGAGACGAAGATACATT
TGGTCTGAAGAGGAGTCAGCTAAATGAGTTATGA
AA sequence
>Lus10006915 pacid=23142110 polypeptide=Lus10006915 locus=Lus10006915.g ID=Lus10006915.BGIv1.0 annot-version=v1.0
MATLSPFLLSPLASIANARSCCRSSSSTTQRWPTFSLTKTLKPSRSRTVVVHGGRINSGDSRPDGAQFIDEDGVVEDMDGYMNYLSLEYDSVWDTKPSWC
QPWTIALTGVLMISGSWLVLQSVAVTAIVVLLVSAWWYIFLYSYPREYSNMIAERRKRVTSGDEDTFGLKRSQLNEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G02725 unknown protein Lus10006915
[exp]
0 1
AT1G67700 unknown protein Lus10006442
[exp]
1.4 0.9779
AT1G67700 unknown protein Lus10011383
[exp]
2.8 0.9719
AT1G05190 EMB2394 embryo defective 2394, Ribosom... Lus10013041
[exp]
4.2 0.9718
AT5G22340 unknown protein Lus10043400
[exp]
6.7 0.9665
AT5G14320 EMB3137 EMBRYO DEFECTIVE 3137, Ribosom... Lus10025642
[exp]
6.9 0.9682
AT2G24020 Uncharacterised BCR, YbaB fami... Lus10015490
[exp]
6.9 0.9553
AT5G65220 Ribosomal L29 family protein ... Lus10000745
[exp]
9.8 0.9660
AT1G18170 FKBP-like peptidyl-prolyl cis-... Lus10038954
[exp]
11.0 0.9622
AT1G79850 PDE347, CS17, P... PLASTID RIBOSOMAL SMALL SUBUNI... Lus10025799
[exp]
11.6 0.9617
AT4G02725 unknown protein Lus10014675
[exp]
11.8 0.9613

Lus10006915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.