Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02730 498 / 3e-179 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 381 / 5e-133 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 147 / 6e-42 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 140 / 4e-38 WD-40 repeat family protein / notchless protein, putative (.1) AT2G43770 125 / 2e-33 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 127 / 7e-33 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G08560 120 / 3e-30 transducin family protein / WD-40 repeat family protein (.1.2) AT1G71840 118 / 4e-30 transducin family protein / WD-40 repeat family protein (.1) AT5G25150 119 / 1e-29 TAF5 TBP-associated factor 5 (.1) AT2G21390 118 / 3e-29 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014674 [exp] 622 / 0 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 389 / 2e-136 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 382 / 2e-133 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 143 / 2e-40 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 147 / 5e-40 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10002090 [exp] 142 / 5e-40 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 146 / 2e-39 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 145 / 2e-39 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 142 / 1e-38 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G051900 [exp] 552 / 0 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 395 / 1e-138 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 365 / 6e-127 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 148 / 3e-42 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 141 / 2e-38 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G045800 [exp] 138 / 1e-36 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G096900 [exp] 129 / 7e-35 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 129 / 2e-33 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G055800 [exp] 124 / 1e-31 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G087200 [exp] 122 / 1e-31 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10006916 pacid=23142114 polypeptide=Lus10006916 locus=Lus10006916.g ID=Lus10006916.BGIv1.0 annot-version=v1.0 ATGGCCAGCGGCGGAGCTGGCGCTCAACAGTCAGCGCCACCGTATAAACCCTACCGTATCCTCAAGACCCTAAGGAACCACGACCGCGCAGTCTCCTGCG TCAAATTCTCCAACGACGGCAACCTCCTCGCCTCCGCCTCCCTCGACAAAACCCTAATCCTCTGGTCCGCCACTAACTTCTCCCTCCTCAAGCGCCTCGT CGGCCACTCCGAGGGCGTCTCCGACATCGCCTGGTCCTCCGATTCCCACTACATCTGCTCCGCATCCGATGATCGCACCATCCGCATTTGGGACGCGCGC CCCCCCTTCGACTGCCTCAAGATCCTCCGGGGCCACTCCAACTTCGTCTTCTCCGTCAATTTTAACCCCCAGTCCAATCTGATCGTCTCCGGTTCCTTCG ACGAGACCATCCGGATCTGGGAGGTCACCACGGGGAAGTGCGCTCATGTTATCAGGGCTCACTCGCAGCCTGTGACTTCCGTTCATTTCAATCGTGATGG CTCGCTCATCGTTTCGGGAAGCCATGATGGGACTTGCAAGATTTGGGAGGCCGCTACGGGGACCTGTTTGAAGACTCTCATCTCTGATGTCCGTGCTGCC GTGTCATTTGCCAAGTTCTCACCTAATGGGAAGTTCATTCTTGCTGCCACCCTTGACAGCACTCTTAAGCTGTGGAATTATTCAACAGGAAAGTTCTTGA AGATCTACACAGGCCACACGAACAAAGTGTACTGCGTCAGCTCGACATTTTCAGTGACGAACGGCAAGTATATCGTTAGTGGGTCAGAAGATAAGTGTGT GTACTTGTGGGATCTGCAGCAGAAAACCATGCTTCAGAAACTCGAAGGCCATTCTGACACGGTCATTTCTGTAAGCTGTCACCCTACTGCCAATAGAATA GCTTCTGCAGGTCTTGATGAAGATAGAAGCGTCAAAATCTGGGTGCAAGACCCTTGA
AA sequence Show only first row Show all	>Lus10006916 pacid=23142114 polypeptide=Lus10006916 locus=Lus10006916.g ID=Lus10006916.BGIv1.0 annot-version=v1.0 MASGGAGAQQSAPPYKPYRILKTLRNHDRAVSCVKFSNDGNLLASASLDKTLILWSATNFSLLKRLVGHSEGVSDIAWSSDSHYICSASDDRTIRIWDAR PPFDCLKILRGHSNFVFSVNFNPQSNLIVSGSFDETIRIWEVTTGKCAHVIRAHSQPVTSVHFNRDGSLIVSGSHDGTCKIWEAATGTCLKTLISDVRAA VSFAKFSPNGKFILAATLDSTLKLWNYSTGKFLKIYTGHTNKVYCVSSTFSVTNGKYIVSGSEDKCVYLWDLQQKTMLQKLEGHSDTVISVSCHPTANRI ASAGLDEDRSVKIWVQDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10006916 [exp]	0	1
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	2.4	0.9259
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10016378 [exp]	4.9	0.9342
AT5G52370			unknown protein		Lus10040713 [exp]	6.2	0.9322
AT3G53630			unknown protein		Lus10003983 [exp]	10.8	0.9199
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	15.3	0.9248
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10023078 [exp]	17.1	0.9223
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	17.9	0.8956
AT2G20820			unknown protein		Lus10031625 [exp]	20.1	0.9137
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	21.1	0.9250
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	22.9	0.9252

Compare expression of checked genes

Lus10006916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.