Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 210 / 3e-62 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G79460 97 / 1e-22 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 69 / 6e-13 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 59 / 2e-09 AtTPS10 terpene synthase 10 (.1) AT3G25810 49 / 3e-06 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 45 / 4e-05 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 45 / 4e-05 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16730 44 / 0.0001 AtTPS02 terpene synthase 02 (.1) AT5G23960 42 / 0.0004 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 41 / 0.0009 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006925 [exp] 348 / 3e-114 AT4G02780 759 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004323 [exp] 320 / 9e-104 AT4G02780 733 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10022047 [exp] 317 / 9e-103 AT4G02780 812 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042593 [exp] 315 / 6e-101 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006922 [exp] 100 / 2e-26 ND 36 / 2e-06 Lus10016598 [exp] 79 / 3e-16 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 70 / 3e-13 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 69 / 6e-13 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 68 / 2e-12 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052100 [exp] 287 / 5e-91 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 281 / 5e-89 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 84 / 6e-18 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 80 / 1e-16 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 65 / 2e-11 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.019G023014 [exp] 56 / 7e-09 AT4G16740 294 / 1e-96 terpene synthase 03 (.1.2) Potri.007G119700 [exp] 56 / 9e-09 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.007G118600 [exp] 56 / 1e-08 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023020 [exp] 56 / 1e-08 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023006 [exp] 55 / 3e-08 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10006917 pacid=23142092 polypeptide=Lus10006917 locus=Lus10006917.g ID=Lus10006917.BGIv1.0 annot-version=v1.0 ATGAAAGAAGAAGTCGAGATAATTGAAACAGAGAGTTTCATTTCCCGTCTATTTTTCCAAGTTGATGTCGGATATGCGCTGGACATCCCGTTTTATGCGA GCTTGTCTCGACTGGAGAGTAGGTTCTTCATCGAACAATACGACGGGGAAGAGGATGTATGGATTGGCAAGACTCTTTATAGGATGCCTTTCGTGAACAA TAACGAGTACTTGGAGCTGGCAAAGATGGACTACAACAATTGTCAAGCATTGCACATGATTGAATGGGACAATCTTCAGACGTGGTACGAGGAGCATGGT CTGAGCGAATACGGGGTGAGTAAGAAGAGGTTGTTGTTTGGATATTACGTGGCAGCTGCCACCGTATTCGAAGAGGACAGGTCAGGTGAGAGACTGGCGT GGGCCAAGACAAATGCCTTGTTGGAAGCCATACAGTCATACTTCCACGTCAACAATTCGAAAGATCAACGGACTGCCTTTGTCCTTGAATTCACCACCAC CCACCACGTCAGCGGCATTGGTGTCCCGGAAGCATCCACAGTCAGCAACCTGGTGCAGCTTCTGCTCGACACGCTAGGCTACATCTCCCACCGTGCCCTA GTTGATCATGGCCGGAACATCGGCCATGTCTTACACAGCTCGTGGGAAGAGTGGTTGGCGAAATGGGAAGACGAAGGAGAAAGATCAGTTGGAGAAGCAG AGTTGGTGGTAGAGACACTGAGATTGACTAATATTACTGCTAATCACAGCTTAGATGATCCCCTGTACCGCCAACTCACTGATCTCACCAATGCAGTCCG CCATCAACTTGCCCATTCCCACAACAACGACGATAGCAGCTCCAGAAGAAGCACATGCCCATAG
AA sequence Show only first row Show all	>Lus10006917 pacid=23142092 polypeptide=Lus10006917 locus=Lus10006917.g ID=Lus10006917.BGIv1.0 annot-version=v1.0 MKEEVEIIETESFISRLFFQVDVGYALDIPFYASLSRLESRFFIEQYDGEEDVWIGKTLYRMPFVNNNEYLELAKMDYNNCQALHMIEWDNLQTWYEEHG LSEYGVSKKRLLFGYYVAAATVFEEDRSGERLAWAKTNALLEAIQSYFHVNNSKDQRTAFVLEFTTTHHVSGIGVPEASTVSNLVQLLLDTLGYISHRAL VDHGRNIGHVLHSSWEEWLAKWEDEGERSVGEAELVVETLRLTNITANHSLDDPLYRQLTDLTNAVRHQLAHSHNNDDSSSRRSTCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006917 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029316 [exp]	1.0	0.9982
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	5.7	0.9806
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	7.1	0.9776
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	8.0	0.9186
AT2G32885			Rapid alkalinization factor (R...		Lus10000923 [exp]	8.1	0.9165
					Lus10027066 [exp]	8.2	0.9776
					Lus10006918 [exp]	9.2	0.9776
					Lus10043052 [exp]	9.8	0.8801
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015158 [exp]	10.1	0.9776
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034502 [exp]	10.1	0.9113

Compare expression of checked genes

Lus10006917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.