Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006919 pacid=23142102 polypeptide=Lus10006919 locus=Lus10006919.g ID=Lus10006919.BGIv1.0 annot-version=v1.0 ATGTTACACCAATACTGTTTTCTCCCATGGGTAGTTGTTCTGCCGCACTCGCTGTGTTCTAATTTCTTTCGGTTCCCACTTGTTTCCAGCTTTGGTATAC TTCCATCCTCGCCTGAGACATCGAGGAAGCGCAAACTTGTTGTGGCAAAACCAAAACCTACATCCAGAACAACCCGGGCCCGTAAAAAAACAGCTGTTGT CCCTCCAACCCCGACCACCCCTGGAAAGCCTATCACCCGACGCATTGCAGCAATGCCTCCTGTTGTCCCCCTGGAAACCATGCATCCTATCTGTACGTTT GTTCTTACTCCAGCTTCCGACTTTGCCACATCAAATGATGATGCCCCGCTAGCTTTGCTCGTGAGCCAGCAAAGACACCCTAGCTCACCTAGGGACCCTC TGCATGCACCTATGGACCTCACACATCCACAGCCTGATGCCACTCCTCCTGAAGTTACCATCTCAGCTGTCCCTGACACCATCACACCTCGCCTCAACAA ACCAAAACTACTTGTGCCACCACCTACTGCTATGCCTCCACACTCGGTACCCGCGACCATTTCACTTCCTCTTGGTACACCTCCGCCGCATTCTCCATCT GCATTGTCTGCATTCCCGTTGGCTCAAGTCAAGCTAGAAAAACTATCAGCCTCCGCAGTTGTAGCAGCTGACCACTCCCAGCCAACCCCGGCCCCTCCAC ATTCTTTTGAACCAAGTTCAGCGGGCCTTCAACTTGCTCCCGTGGCCCGGAAACGCCTGTTCATGCCCTGA
AA sequence Show only first row Show all	>Lus10006919 pacid=23142102 polypeptide=Lus10006919 locus=Lus10006919.g ID=Lus10006919.BGIv1.0 annot-version=v1.0 MLHQYCFLPWVVVLPHSLCSNFFRFPLVSSFGILPSSPETSRKRKLVVAKPKPTSRTTRARKKTAVVPPTPTTPGKPITRRIAAMPPVVPLETMHPICTF VLTPASDFATSNDDAPLALLVSQQRHPSSPRDPLHAPMDLTHPQPDATPPEVTISAVPDTITPRLNKPKLLVPPPTAMPPHSVPATISLPLGTPPPHSPS ALSAFPLAQVKLEKLSASAVVAADHSQPTPAPPHSFEPSSAGLQLAPVARKRLFMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006919 [exp]	0	1
AT5G01780			2-oxoglutarate-dependent dioxy...		Lus10009087 [exp]	1.4	0.9831
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10011944 [exp]	4.5	0.9934
					Lus10033534 [exp]	8.3	0.9755
					Lus10039990 [exp]	9.6	0.9755
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	10.7	0.9755
AT1G43780		SCPL44	serine carboxypeptidase-like 4...		Lus10040330 [exp]	11.7	0.9755
					Lus10022805 [exp]	12.7	0.9755
AT5G61630			unknown protein		Lus10032501 [exp]	13.0	0.5871
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	13.6	0.9755
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	14.4	0.9755

Compare expression of checked genes

Lus10006919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.