Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027613 [exp] 100 / 7e-23 ND / Lus10007415 [exp] 90 / 2e-19 ND / Lus10006886 [exp] 86 / 4e-18 ND / Lus10014643 [exp] 79 / 9e-17 ND / Lus10026444 [exp] 76 / 1e-14 ND / Lus10017800 [exp] 71 / 1e-14 ND / Lus10017801 [exp] 66 / 3e-12 ND / Lus10039353 [exp] 67 / 9e-12 ND / Lus10034849 [exp] 64 / 1e-11 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006920 pacid=23142106 polypeptide=Lus10006920 locus=Lus10006920.g ID=Lus10006920.BGIv1.0 annot-version=v1.0 ATGGCAAGTCAATCCCCTAAACTTGCAGCCTTTGTTTTTTCTCTCCGCCGGACCAGCTTCCTCTTCTCCACCCGTTCTGCCTCTTGGGTCCACTTCCTCT GCAGTCGTCTTCCGATGGCTCTCCTGTATTATCTGGAACACACGCCTCCAGGTTCGTTCTATATCCCTCGCTTTTTCCAACACCCGACTTTCCCACGATT TCCTGACCTCAGTTCTATTGGCCACCAGAACTGGAGCAGTACACCGCGAACCTTGCAGATCTGGTGCTCGGCGCGAATACCGCTGTGTTCATCTTCCGTC TTATACACTCTTGGCGGGATCCTCTCCCGGTGCCCCCCGATGAAGCATCTCCGCTATGTCATCGGCCGCATCATAGGTGTTACTCGGCCAACACCCTCTT CAGCAGGCGGCGTTAACTTCACCATTCTACTGGAACACCCAAGGTCTTACACATTCAATTTACTCATACTCAATACACATTGTCAAATTGATTTGGTCAC AAACCGTGCTGAACCAACTTATCTTCCCCGCCTGCAAACTTGCAGCTACACCCGTGTTCTCATTCGGTACACTCACTTCATGCAACCTGATGAATTCGAT CTTTACCGCGTTATCGAACTTCAATTGGAAGGCCCGGTCATTTGCATTCTTACCTGCCTAACAACCTCGGACCCTTCGGGTACGTGTCCTTCCCTTCCAA CTGCTGCCCTTGAGAACACTGCTGCTTCTAGAATCATTTTCGCACCCAACGCAAAGCCATTCAAACAATGCTACGAAATGTACGTGGTACTGACTCTTCT TTCGCCAGTGTGCGTACTGTCAGTAATTTACATTTCTTCACGTAATGCAGGTTCTCGCACCTTCACACCCCTGTTCGTATGCTTCATCCAGCTCACCACC ACTTGTTTGCTCTCCTGCGAGGTGAACTCCCACGCAAAATCCATCTATCAGCGCTGCTTATGGAACGACCCATTTTACCCCCCGAAGCCAATTTACTCGG TTGTCGCCACATGTGCGGATGCTACAGCTTCAGCTGCATTCCTATTCACTGACATTTCAGCTACCCTTCATTTTCGAATGGCCCCCTCTGATTATGCAGC GCTGCCCCGGGAGGTCCAGACTGGGATAATGCTTGCACTCCATGGCCATATGTTCATAGCTGCTGGCCGAGGATACACAGCGCGCGCAAAATTCGTGGTC ACTAACCTCTGGGACCCAGTAGCTGCATTCTACTCGGAAGCATGA
AA sequence Show only first row Show all	>Lus10006920 pacid=23142106 polypeptide=Lus10006920 locus=Lus10006920.g ID=Lus10006920.BGIv1.0 annot-version=v1.0 MASQSPKLAAFVFSLRRTSFLFSTRSASWVHFLCSRLPMALLYYLEHTPPGSFYIPRFFQHPTFPRFPDLSSIGHQNWSSTPRTLQIWCSARIPLCSSSV LYTLGGILSRCPPMKHLRYVIGRIIGVTRPTPSSAGGVNFTILLEHPRSYTFNLLILNTHCQIDLVTNRAEPTYLPRLQTCSYTRVLIRYTHFMQPDEFD LYRVIELQLEGPVICILTCLTTSDPSGTCPSLPTAALENTAASRIIFAPNAKPFKQCYEMYVVLTLLSPVCVLSVIYISSRNAGSRTFTPLFVCFIQLTT TCLLSCEVNSHAKSIYQRCLWNDPFYPPKPIYSVVATCADATASAAFLFTDISATLHFRMAPSDYAALPREVQTGIMLALHGHMFIAAGRGYTARAKFVV TNLWDPVAAFYSEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006920 [exp]	0	1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10037887 [exp]	2.8	0.8062
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	8.9	0.7800
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	9.5	0.7661
AT3G28180		ATCSLC4, CSLC4,...	CELLULOSE-SYNTHASE LIKE C4, Ce...		Lus10039475 [exp]	11.8	0.7726
AT5G60750			CAAX amino terminal protease f...		Lus10017536 [exp]	12.5	0.7845
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	13.5	0.7838
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	13.5	0.7463
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	16.1	0.7677
AT4G37250			Leucine-rich repeat protein ki...		Lus10030333 [exp]	17.2	0.7624
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	19.9	0.6963

Compare expression of checked genes

Lus10006920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.